RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 ICAM3P32942 547 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 IFRD2Q12894 506 aaPredicted RBP13.93□□□□□ -0.18
USP49-201ENST00000373006 RALGDSQ12967 914 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 LPIN1Q14693 890 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 C6orf183Q5T699 404 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 EFCAB12Q6NXP0 572 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 NANOGNBQ7Z5D8 188 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 CCNYL1Q8N7R7 359 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 CNDP1Q96KN2 507 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 SLC2A11Q9BYW1 496 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 BCAP29Q9UHQ4 241 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 RAP2CQ9Y3L5 183 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 KCNU1A8MYU2 1149 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 TMEM114B3SHH9 223 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 PLOD2O00469 737 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 ARL4AP40617 200 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 NDST2P52849 883 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 MBTD1Q05BQ5 628 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 CERCAMQ5T4B2 595 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 KRT80Q6KB66 452 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 GK5Q6ZS86 529 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.93□□□□□ -0.18
USP49-201ENST00000373006 OMDQ99983 421 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 C2orf40Q9H1Z8 148 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 CXCL16Q9H2A7 254 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 PRDM12Q9H4Q4 367 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 SH3GLB1Q9Y371 365 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 AP4S1Q9Y587 144 aa13.93□□□□□ -0.18
USP49-201ENST00000373006 COPG1Q9Y678 874 aaKnown RBP13.93□□□□□ -0.18
USP49-201ENST00000373006 CCDC130P13994 396 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 ADORA2BP29275 332 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 PRAMEP78395 509 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 DLK2Q6UY11 383 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 CHERPQ8IWX8 916 aaKnown RBP13.92□□□□□ -0.18
USP49-201ENST00000373006 AGBL3Q8NEM8 1001 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 SLC35F5Q8WV83 523 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 CHRAC1Q9NRG0 131 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 IARS2Q9NSE4 1012 aaKnown RBP13.92□□□□□ -0.18
USP49-201ENST00000373006 THEGQ9P2T0 379 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 CDYLQ9Y232 598 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 BRWD3Q6RI45 1802 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 TCAF2A6NFQ2 919 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 HSPA13P48723 471 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 TNFAIP1Q13829 316 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 TMEM132DQ14C87 1099 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 USP41Q3LFD5 358 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 FAM219BQ5XKK7 198 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 ITPRIPL1Q6GPH6 555 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 ZBTB8BQ8NAP8 495 aaPredicted RBP13.92□□□□□ -0.18
USP49-201ENST00000373006 APBA2Q99767 749 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 NOL11Q9H8H0 719 aaKnown RBP13.92□□□□□ -0.18
USP49-201ENST00000373006 ZBTB26Q9HCK0 441 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 DPP3Q9NY33 737 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 TNFSF13BQ9Y275 285 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 NME7Q9Y5B8 376 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 CEP350Q5VT06 3117 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 COL4A5P29400 1685 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 SIP14410 1827 aa13.92□□□□□ -0.18
USP49-201ENST00000373006 PPEF2O14830 753 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 CKMT2P17540 419 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 PTPRAP18433 802 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 EPHX2P34913 555 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 PITX1P78337 314 aaPredicted RBP13.91□□□□□ -0.18
USP49-201ENST00000373006 INCA1Q0VD86 236 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 IKBKEQ14164 716 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 MTX3Q5HYI7 312 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 POTEHQ6S545 545 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 LAYNQ6UX15 382 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 NCCRP1Q6ZVX7 275 aaPredicted RBP13.91□□□□□ -0.18
USP49-201ENST00000373006 CLEC14AQ86T13 490 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 TMEM126BQ8IUX1 230 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 DIS3LQ8TF46 1054 aaKnown RBP13.91□□□□□ -0.18
USP49-201ENST00000373006 PPWD1Q96BP3 646 aaKnown RBP13.91□□□□□ -0.18
USP49-201ENST00000373006 SGF29Q96ES7 293 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 NAT9Q9BTE0 207 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 DRC3Q9H069 523 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 DPEP3Q9H4B8 488 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 RRN3Q9NYV6 651 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 UBP1Q9NZI7 540 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 RUVBL2Q9Y230 463 aaKnown RBP13.91□□□□□ -0.18
USP49-201ENST00000373006 E7ENX8 843 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 ARIH2O95376 493 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 H6PDO95479 791 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 PDGFRBP09619 1106 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 SBK3P0C264 359 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 ZNF23P17027 643 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 ATICP31939 592 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 ENTPD1P49961 510 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 NAB1Q13506 487 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 ZNF460Q14592 562 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 GRM3Q14832 879 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 SPANXN3Q5MJ09 141 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 TREML2Q5T2D2 321 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 BORAQ6PGQ7 559 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 MTMR14Q8NCE2 650 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 KCTD4Q8WVF5 259 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 DLG3Q92796 817 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 ABHD8Q96I13 439 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 VPS39Q96JC1 886 aa13.91□□□□□ -0.18
USP49-201ENST00000373006 HAUS8Q9BT25 410 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms