RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 HNMTP50135 292 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 SESN3P58005 492 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 TGFBR3Q03167 851 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 EHHADHQ08426 723 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 ZNF252P-AS1Q0IIN9 211 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 C1DQ13901 141 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 TARBP2Q15633 366 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 BOLA3Q53S33 107 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 MBLAC2Q68D91 279 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 CYP20A1Q6UW02 462 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 SH3BP5LQ7L8J4 393 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 SPATA21Q7Z572 469 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 ZC3HC1Q86WB0 502 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 OR5L2Q8NGL0 311 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 BRIX1Q8TDN6 353 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 LRRC8CQ8TDW0 803 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 LCN9Q8WX39 176 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 CASKIN2Q8WXE0 1202 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 NANOS1Q8WY41 292 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 STMN2Q93045 179 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 EXT2Q93063 718 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 EIF2AK1Q9BQI3 630 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 KCTD10Q9H3F6 313 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 FZD3Q9NPG1 666 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 GKN1Q9NS71 199 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 COMMD8Q9NX08 183 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 COPG2Q9UBF2 871 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 DRG1Q9Y295 367 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 PMF1-BGLAPU3KQ54 211 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 NDUFAB1O14561 156 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 SNX4O95219 450 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 PLEKP08567 350 aaPredicted RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 BMP7P18075 431 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 CDH2P19022 906 aaPredicted RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 GNA15P30679 374 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 BASP1P80723 227 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 MRPS21P82921 87 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 NCOA4Q13772 614 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 TUBB2AQ13885 445 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 AP5B1Q2VPB7 878 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 VPS26BQ4G0F5 336 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 ARHGAP40Q5TG30 622 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 CES4AQ5XG92 561 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 BRSK2Q8IWQ3 736 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 RHOT2Q8IXI1 618 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 UBE2FQ969M7 185 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 CABS1Q96KC9 395 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 TUBB2BQ9BVA1 445 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 RTFDC1Q9BY42 306 aaPredicted RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 BACH2Q9BYV9 841 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 ZMYND12Q9H0C1 365 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 NANOGQ9H9S0 305 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 POPDC2Q9HBU9 364 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 ABCB10Q9NRK6 738 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 KRT84Q9NSB2 600 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 KRT82Q9NSB4 513 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 UPB1Q9UBR1 384 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 MBD1Q9UIS9 605 aaPredicted RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 PADI3Q9ULW8 664 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 ADGRA3Q8IWK6 1321 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 TCRBV21S2A2A0A5A6 115 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 TLDC2A0PJX2 215 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 TMCC2O75069 709 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 KLF8O95600 359 aaPredicted RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 SLC35G6P0C7Q6 338 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 PFKLP17858 780 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 OR1E1P30953 314 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 SOAT1P35610 550 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 MRE11P49959 708 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 ZNF280AP59817 542 aaPredicted RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 C16orf86Q6ZW13 317 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 PTF1AQ7RTS3 328 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 KIF18AQ8NI77 898 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 KCTD13Q8WZ19 329 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 CPT1BQ92523 772 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 ITCHQ96J02 903 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 SENP8Q96LD8 212 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 PGLYRP2Q96PD5 576 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 JMJD8Q96S16 334 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 SLC39A3Q9BRY0 314 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 ESYT1Q9BSJ8 1104 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 PCBD2Q9H0N5 130 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 FOXP1Q9H334 677 aaPredicted RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 PARVBQ9HBI1 364 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 EML4Q9HC35 981 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 UBE2TQ9NPD8 197 aaPredicted RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 ARHGEF38Q9NXL2 777 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 EPHA6Q9UF33 1036 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 TUBGCP4Q9UGJ1 667 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 CYP8B1Q9UNU6 501 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 SMG5Q9UPR3 1016 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 REXO2Q9Y3B8 237 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 NOP16Q9Y3C1 178 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 A0A1B0GTH6 734 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 PRR33A8MZF0 331 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 GOLGA8KD6RF30 607 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 APOL1O14791 398 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 GLULP15104 373 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 IFNAR1P17181 557 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms