RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 VITQ6UXI7 678 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 SLC13A5Q86YT5 568 aaPredicted RBP9.36□□□□□ -0.91
UPF2-202ENST00000357604 RAPGEF5Q92565 580 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 RUBCNQ92622 972 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 PCDH18Q9HCL0 1135 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 MPP6Q9NZW5 540 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 FNDC3AQ9Y2H6 1198 aaKnown RBP9.36□□□□□ -0.91
UPF2-202ENST00000357604 MAGEB16A2A368 324 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 SDHBP21912 280 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 CNR2P34972 360 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 GALK1P51570 392 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 ZNF211Q13398 564 aaPredicted RBP9.36□□□□□ -0.91
UPF2-202ENST00000357604 SLMAPQ14BN4 828 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 C2orf27AQ580R0 203 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 FBXL22Q6P050 247 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 RASSF3Q86WH2 238 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 SLC25A41Q8N5S1 370 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 CAMKK1Q8N5S9 505 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 VPS39Q96JC1 886 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 PKNOX2Q96KN3 472 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 PHTF1Q9UMS5 762 aa9.36□□□□□ -0.91
UPF2-202ENST00000357604 E5RI56 91 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 SCAMP3O14828 347 aaKnown RBP9.35□□□□□ -0.91
UPF2-202ENST00000357604 RBP3P10745 1247 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 CTSEP14091 401 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 IL9P15248 144 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 GOT1P17174 413 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 GTF2F1P35269 517 aaKnown RBP eCLIP9.35□□□□□ -0.91
UPF2-202ENST00000357604 ZXDAP98168 799 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 HTR4Q13639 388 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 SYPL2Q5VXT5 272 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 RAB44Q7Z6P3 723 aaPredicted RBP9.35□□□□□ -0.91
UPF2-202ENST00000357604 CCDC33Q8N5R6 958 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 CCDC185Q8N715 623 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 SLC2A4RGQ9NR83 387 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 PLK2Q9NYY3 685 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 EPOPA6NHQ4 379 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 CCNB1P14635 433 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 BLKP51451 505 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 ARSEP51690 589 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 ZNF33AQ06730 810 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 CUL1Q13616 776 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 DPYSL2Q16555 572 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 CCNG2Q16589 344 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 CCDC137Q6PK04 289 aaKnown RBP9.35□□□□□ -0.91
UPF2-202ENST00000357604 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.35□□□□□ -0.91
UPF2-202ENST00000357604 CYP2U1Q7Z449 544 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 OR14C36Q8NHC7 312 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 GUCD1Q96NT3 240 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 FICDQ9BVA6 458 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 TRIM31Q9BZY9 425 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 GOLPH3Q9H4A6 298 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 SOX1O00570 391 aaPredicted RBP9.35□□□□□ -0.91
UPF2-202ENST00000357604 HOXC11O43248 304 aaPredicted RBP9.35□□□□□ -0.91
UPF2-202ENST00000357604 JCHAINP01591 159 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 ARSAP15289 507 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 ERCC2P18074 760 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 MSH3P20585 1137 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 BRAT1Q6PJG6 821 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 AVL9Q8NBF6 648 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 DDX1Q92499 740 aaKnown RBP9.35□□□□□ -0.91
UPF2-202ENST00000357604 CXCL16Q9H2A7 254 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 TRABDQ9H4I3 376 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 HADHAP40939 763 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 NPY2RP49146 381 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 OTUD4Q01804 1114 aaKnown RBP9.35□□□□□ -0.91
UPF2-202ENST00000357604 SCAPQ12770 1279 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 GPS1Q13098 491 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 DLG2Q15700 870 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 PARP6Q2NL67 630 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 ASTLQ6HA08 431 aaPredicted RBP9.35□□□□□ -0.91
UPF2-202ENST00000357604 LIMS2Q7Z4I7 341 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 FAM124AQ86V42 546 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 PPP1R14CQ8TAE6 165 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 N4BP2L2Q92802 583 aaPredicted RBP9.35□□□□□ -0.91
UPF2-202ENST00000357604 CFAP36Q96G28 342 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 NMUR1Q9HB89 426 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 TMPRSS4Q9NRS4 437 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 IL37Q9NZH6 218 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 ENC1O14682 589 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 AXIN1O15169 862 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 C5AR1P21730 350 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 STX2P32856 288 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 RPIAP49247 311 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 PTK6Q13882 451 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 TCEAL1Q15170 157 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 MEI1Q5TIA1 1274 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 IL27RAQ6UWB1 636 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 HFE2Q6ZVN8 426 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 GAREM2Q75VX8 874 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 OXR1Q8N573 874 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 RPLP0P6Q8NHW5 317 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 HMCESQ96FZ2 354 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 NUDCD1Q96RS6 583 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 MLPHQ9BV36 600 aaPredicted RBP9.35□□□□□ -0.91
UPF2-202ENST00000357604 TRIM54Q9BYV2 358 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 OSGEPQ9NPF4 335 aa9.35□□□□□ -0.91
UPF2-202ENST00000357604 ZNF839A8K0R7 811 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 GIPC1O14908 333 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 CRCPO75575 148 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms