RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 HPCAL1P37235 193 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 IL5RAQ01344 420 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 UBE3AQ05086 875 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 SQLEQ14534 574 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 TIMM50Q3ZCQ8 353 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 INTS11Q5TA45 600 aaKnown RBP11.92□□□□□ -0.5
COL9A1-202ENST00000357250 IRF2BP2Q7Z5L9 587 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 GPSM1Q86YR5 675 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 ZDHHC13Q8IUH4 622 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 C4orf32Q8N8J7 132 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 CDRT15Q96T59 188 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 POMKQ9H5K3 350 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 OR12D3Q9UGF7 316 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 SPATA31C2B4DYI2 1134 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 PSMD12O00232 456 aaPredicted RBP11.92□□□□□ -0.5
COL9A1-202ENST00000357250 ZBTB14O43829 449 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 DLGAP3O95886 979 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 PCNAP12004 261 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 SERPINA4P29622 427 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 S100A3P33764 101 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 ELF3P78545 371 aaPredicted RBP11.92□□□□□ -0.5
COL9A1-202ENST00000357250 FSCN1Q16658 493 aaKnown RBP11.92□□□□□ -0.5
COL9A1-202ENST00000357250 PPP4R4Q6NUP7 873 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 MTSS1LQ765P7 747 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 C11orf96Q7Z7L8 435 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 ADHFE1Q8IWW8 467 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 ACO2Q99798 780 aaKnown RBP11.92□□□□□ -0.5
COL9A1-202ENST00000357250 LHX5Q9H2C1 402 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 RIPK3Q9Y572 518 aa11.92□□□□□ -0.5
COL9A1-202ENST00000357250 ATXN2Q99700 1313 aaKnown RBP11.91□□□□□ -0.5
COL9A1-202ENST00000357250 ATG7O95352 703 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 MED26O95402 600 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 POMCP01189 267 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 CATP04040 527 aaKnown RBP11.91□□□□□ -0.5
COL9A1-202ENST00000357250 CKBP12277 381 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 DARSP14868 501 aaKnown RBP11.91□□□□□ -0.5
COL9A1-202ENST00000357250 NME5P56597 212 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 RAB14P61106 215 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 FAM171A1Q5VUB5 890 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 PHACTR4Q8IZ21 702 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 LGI2Q8N0V4 545 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 RORBQ92753 470 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 EBNA1BP2Q99848 306 aaKnown RBP11.91□□□□□ -0.5
COL9A1-202ENST00000357250 THG1LQ9NWX6 298 aaKnown RBP11.91□□□□□ -0.5
COL9A1-202ENST00000357250 MARCH2Q9P0N8 246 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 RCOR3Q9P2K3 495 aaPredicted RBP11.91□□□□□ -0.5
COL9A1-202ENST00000357250 MSCO60682 206 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 SEC22BO75396 215 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 FGFR1P11362 822 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 RPL3P39023 403 aaKnown RBP11.91□□□□□ -0.5
COL9A1-202ENST00000357250 LYPLAL1Q5VWZ2 237 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 TTC23Q5W5X9 447 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 KRT73Q86Y46 540 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 MTERF3Q96E29 417 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 CIPCQ9C0C6 399 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.91□□□□□ -0.5
COL9A1-202ENST00000357250 CACNA2D2Q9NY47 1150 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 CHD2O14647 1828 aaKnown RBP11.91□□□□□ -0.5
COL9A1-202ENST00000357250 BTN3A1O00481 513 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 RPA3P35244 121 aaPredicted RBP11.91□□□□□ -0.5
COL9A1-202ENST00000357250 GPR15P49685 360 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 TATDN1Q6P1N9 297 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 TFAP2DQ7Z6R9 452 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 RASGEF1CQ8N431 466 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 NLGN2Q8NFZ4 835 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 HGH1Q9BTY7 390 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 TRMOQ9BU70 441 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 SNRNP25Q9BV90 132 aaKnown RBP11.91□□□□□ -0.5
COL9A1-202ENST00000357250 CDT1Q9H211 546 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 ANAPC2Q9UJX6 822 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 TRAFD1O14545 582 aaPredicted RBP11.91□□□□□ -0.5
COL9A1-202ENST00000357250 SLC16A1P53985 500 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 PLIN5Q00G26 463 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 CREMQ03060 361 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 STARD3Q14849 445 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 CYP2A13Q16696 494 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 TTC27Q6P3X3 843 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 TRAF7Q6Q0C0 670 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 POTEHQ6S545 545 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 USP45Q70EL2 814 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 RP9Q8TA86 221 aaKnown RBP11.91□□□□□ -0.5
COL9A1-202ENST00000357250 MRPL57Q9BQC6 102 aaKnown RBP11.91□□□□□ -0.5
COL9A1-202ENST00000357250 ATAD3AQ9NVI7 634 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 BCL9LQ86UU0 1499 aa11.91□□□□□ -0.5
COL9A1-202ENST00000357250 COL1A2P08123 1366 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 SLC15A5A6NIM6 579 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 TPP1O14773 563 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 XYLBO75191 536 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 GJB6O95452 261 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 SPATA31C1P0DKV0 1188 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 ATP5C1P36542 298 aaKnown RBP11.9□□□□□ -0.5
COL9A1-202ENST00000357250 MAGEA10P43363 369 aaPredicted RBP11.9□□□□□ -0.5
COL9A1-202ENST00000357250 TTPAP49638 278 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 XIAPP98170 497 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 ACSM2AQ08AH3 577 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 GSTA3Q16772 222 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 CEP78Q5JTW2 689 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 ACSM2BQ68CK6 577 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 ARHGAP17Q68EM7 881 aa11.9□□□□□ -0.5
COL9A1-202ENST00000357250 TXNDC11Q6PKC3 985 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms