RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 H3BN98 237 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 VTNP04004 478 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 ATP5F1P24539 256 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 CASP12Q6UXS9 341 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 PIWIL4Q7Z3Z4 852 aaKnown RBP19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 SIX5Q8N196 739 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 GALNT15Q8N3T1 639 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 FDXACB1Q9BRP7 624 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 PRG3Q9Y2Y8 225 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 PCDHA11Q9Y5I1 949 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 ATP6AP2A0A1C7CYW4 349 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 PEX11AO75192 247 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 ATP6AP2O75787 350 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 BPGMP07738 259 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 STYK1Q6J9G0 422 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 GNEQ9Y223 722 aaKnown RBP19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 CRYL1Q9Y2S2 319 aa19.81■□□□□ 0.76
CCDC88B-202ENST00000356786 GRIN2DO15399 1336 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 VIL1P09327 827 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 OR1G1P47890 313 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 NAA20P61599 178 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 PIGWQ7Z7B1 504 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 ZDHHC15Q96MV8 337 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 ALG9Q9H6U8 611 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 TCRBV7S2A1N4TA0A589 114 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 RRN3P2A6NIE6 340 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 MAGEC1O60732 1142 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 SCNN1BP51168 640 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 RENBPP51606 427 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 TSNQ15631 228 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 FOXR2Q6PJQ5 311 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 RNF157Q96PX1 679 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 C12orf65Q9H3J6 166 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 REEP1Q9H902 201 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 SEMA4BQ9NPR2 832 aaPredicted RBP19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 CAMTA1Q9Y6Y1 1673 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 F5H5T6 163 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 SERPINF2P08697 491 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 DNAJB2P25686 324 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 ITGA1P56199 1179 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 C11orf88Q6PI97 169 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 ZPBP2Q6X784 338 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 TTC30AQ86WT1 665 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 S100ZQ8WXG8 99 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 HPS1Q92902 700 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 OLFM1Q99784 485 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 PRRG3Q9BZD7 231 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 NUDT5Q9UKK9 219 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 ARIH1Q9Y4X5 557 aaPredicted RBP19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 SNX8Q9Y5X2 465 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 MON2Q7Z3U7 1717 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 SLC25A27O95847 323 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 ODC1P11926 461 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 ACAT1P24752 427 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 SLC11A2P49281 568 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 PFKFB4Q16877 469 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 MILR1Q7Z6M3 343 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 SLC9A9Q8IVB4 645 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 HGH1Q9BTY7 390 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 IL22Q9GZX6 179 aa19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 TUBA8Q9NY65 449 aaPredicted RBP19.8■□□□□ 0.76
CCDC88B-202ENST00000356786 BTN3A1O00481 513 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 FESP07332 822 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 YBX3P16989 372 aaKnown RBP eCLIP19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 SLC7A2P52569 658 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 GINS4Q9BRT9 223 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 OSBPL10Q9BXB5 764 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 EGFL7Q9UHF1 273 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 NADKO95544 446 aaPredicted RBP19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 CCDC166P0CW27 439 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 CREB1P16220 341 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 FSTL1Q12841 308 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 ZNF846Q147U1 533 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 INO80DQ53TQ3 878 aaPredicted RBP19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 EGFLAMQ63HQ2 1017 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 DDX53Q86TM3 631 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 PSTKQ8IV42 348 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 UXS1Q8NBZ7 420 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 TRNAU1APQ9NX07 287 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 ZMYM5Q9UJ78 669 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 ITGA11Q9UKX5 1188 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 ALDH1A1P00352 501 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 ASS1P00966 412 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 ABCB1P08183 1280 aaPredicted RBP19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 PCNAP12004 261 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 S100A3P33764 101 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 KLF10Q13118 480 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 MTX3Q5HYI7 312 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 EPHX4Q8IUS5 362 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 KRT78Q8N1N4 520 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 VAT1Q99536 393 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 CADM1Q9BY67 442 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 ADAM28Q9UKQ2 775 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 ITGB6P18564 788 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 OXCT1P55809 520 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 NOMO3P69849 1222 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 CDH18Q13634 790 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 KCTD4Q8WVF5 259 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 CIB1Q99828 191 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 ARHGEF3Q9NR81 526 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms