RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 DNAAF3Q8N9W5 541 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 KLHL23Q8NBE8 558 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 SLC35F5Q8WV83 523 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 ACE2Q9BYF1 805 aaPredicted RBP22.77■■□□□ 1.24
TRIM28-202ENST00000341753 DPEP3Q9H4B8 488 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 SUDS3Q9H7L9 328 aaPredicted RBP22.77■■□□□ 1.24
TRIM28-202ENST00000341753 DPP3Q9NY33 737 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 FIS1Q9Y3D6 152 aa22.77■■□□□ 1.24
TRIM28-202ENST00000341753 ATICP31939 592 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 ARL4AP40617 200 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 IFRD2Q12894 506 aaPredicted RBP22.76■■□□□ 1.23
TRIM28-202ENST00000341753 TMEM110Q86TL2 294 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 NUP93Q8N1F7 819 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 CDCA5Q96FF9 252 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 SCYL1Q96KG9 808 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 PRDM12Q9H4Q4 367 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 OXSMQ9NWU1 459 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 EPS15L1Q9UBC2 864 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 A0A0G2JMZ2 1700 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 DNAJC25-GNG10A0A024R161 153 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 BCAS2O75934 225 aaPredicted RBP22.76■■□□□ 1.23
TRIM28-202ENST00000341753 CCDC130P13994 396 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 MAGEA12P43365 314 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 PITX1P78337 314 aaPredicted RBP22.76■■□□□ 1.23
TRIM28-202ENST00000341753 NAB1Q13506 487 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 FAM219BQ5XKK7 198 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 MYO1HQ8N1T3 1032 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 SNX31Q8N9S9 440 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 SERBP1Q8NC51 408 aaKnown RBP eCLIP22.76■■□□□ 1.237e-7■■■■■ 45.1
TRIM28-202ENST00000341753 DDI1Q8WTU0 396 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 LRTOMTQ8WZ04 291 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 CNDP1Q96KN2 507 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 SLC2A11Q9BYW1 496 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 AKT3Q9Y243 479 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 RAP2CQ9Y3L5 183 aa22.76■■□□□ 1.23
TRIM28-202ENST00000341753 ACOT8O14734 319 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 ZSCAN9O15535 394 aaPredicted RBP22.75■■□□□ 1.23
TRIM28-202ENST00000341753 ZNF26P17031 533 aaPredicted RBP22.75■■□□□ 1.23
TRIM28-202ENST00000341753 TPH1P17752 444 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 CDH15P55291 814 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 PKDCCQ504Y2 493 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 CERCAMQ5T4B2 595 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 GK5Q6ZS86 529 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 TDRKHQ9Y2W6 561 aaKnown RBP22.75■■□□□ 1.23
TRIM28-202ENST00000341753 USP3Q9Y6I4 520 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 LRRC37A2A6NM11 1700 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 BTBD19C9JJ37 291 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 SPANXN3Q5MJ09 141 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 TRIM67Q6ZTA4 783 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 CLEC14AQ86T13 490 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 ANKRD13AQ8IZ07 590 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 RIN3Q8TB24 985 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 SREK1Q8WXA9 508 aaKnown RBP22.75■■□□□ 1.23
TRIM28-202ENST00000341753 SMARCAD1Q9H4L7 1026 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 TIMMDC1Q9NPL8 285 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 IARS2Q9NSE4 1012 aaKnown RBP22.75■■□□□ 1.23
TRIM28-202ENST00000341753 CDYLQ9Y232 598 aa22.75■■□□□ 1.23
TRIM28-202ENST00000341753 COPG1Q9Y678 874 aaKnown RBP22.75■■□□□ 1.23
TRIM28-202ENST00000341753 C22orf31O95567 290 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 PTK2BQ14289 1009 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 RSL24D1Q9UHA3 163 aaKnown RBP22.74■■□□□ 1.23
TRIM28-202ENST00000341753 GINS2Q9Y248 185 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 ARHGEF37A1IGU5 675 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 KCNU1A8MYU2 1149 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 SLC25A27O95847 323 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 HNRNPCP07910 306 aaKnown RBP eCLIP22.74■■□□□ 1.23
TRIM28-202ENST00000341753 HDCP19113 662 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 GJA5P36382 358 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 STT3AP46977 705 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 RALGDSQ12967 914 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 CHERPQ8IWX8 916 aaKnown RBP22.74■■□□□ 1.23
TRIM28-202ENST00000341753 TRPV6Q9H1D0 765 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 PDZD7Q9H5P4 517 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 EFCAB1Q9HAE3 211 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 KLHL8Q9P2G9 620 aaPredicted RBP22.74■■□□□ 1.23
TRIM28-202ENST00000341753 VANGL2Q9ULK5 521 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 CEP350Q5VT06 3117 aa22.74■■□□□ 1.23
TRIM28-202ENST00000341753 PLOD2O00469 737 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 PDGFRBP09619 1106 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 SBK3P0C264 359 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 CCDC166P0CW27 439 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 ZNF460Q14592 562 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 KLHL35Q6PF15 583 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 CYP2R1Q6VVX0 501 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 ARMCX2Q7L311 632 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 LPCAT2Q7L5N7 544 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 CCNYL1Q8N7R7 359 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 KIF12Q96FN5 646 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 NAT9Q9BTE0 207 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 VRTNQ9H8Y1 702 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 ZCWPW2A0A1B0GU75 182 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 TCAF2A6NFQ2 919 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 RBP5P82980 135 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 LPIN1Q14693 890 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 GRM3Q14832 879 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 USP41Q3LFD5 358 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 OR6B3Q8NGW1 331 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 KCTD4Q8WVF5 259 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 VPS39Q96JC1 886 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 SLC29A1Q99808 456 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms