RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 CYBBP04839 570 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 NFKB1P19838 968 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 SARNPP82979 210 aaKnown RBP15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 SLC12A1Q13621 1099 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 FAXCQ5TGI0 409 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 MARC1Q5VT66 337 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 ARMC3Q5W041 872 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 CAND1Q86VP6 1230 aaKnown RBP15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 NSMCE1Q8WV22 266 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 FGF13Q92913 245 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 SMARCD2Q92925 531 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 TADA1Q96BN2 335 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 SLC25A51Q9H1U9 297 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 S1PR5Q9H228 398 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 CDC42EP4Q9H3Q1 356 aaKnown RBP15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 HAUS2Q9NVX0 235 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 RBM22Q9NW64 420 aaKnown RBP eCLIP15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 CLEC1BQ9P126 229 aa15.21■□□□□ 0.03
CCDC88C-202ENST00000334448 NUP210Q8TEM1 1887 aaPredicted RBP15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 GOLGA6CA6NDK9 693 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 GOLGA6BA6NDN3 693 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 RIPK2O43353 540 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 ANXA9O76027 345 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 HLA-DQB2P05538 268 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 GOLGA6DP0CG33 693 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 MAGEA4P43358 317 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 EIF3BP55884 814 aaKnown RBP15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 CDH18Q13634 790 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 DNAJC21Q5F1R6 531 aaKnown RBP15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 OR7D4Q8NG98 312 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 ING5Q8WYH8 240 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 AGAP3Q96P47 875 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 PSKH2Q96QS6 385 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 FEM1AQ9BSK4 669 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 MLPHQ9BV36 600 aaPredicted RBP15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 TMEM109Q9BVC6 243 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 CEP41Q9BYV8 373 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 TTYH1Q9H313 450 aaPredicted RBP15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 SEMA4AQ9H3S1 761 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 IGFLR1Q9H665 355 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 LRRC40Q9H9A6 602 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 VPS45Q9NRW7 570 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 GOLGA6AQ9NYA3 693 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 NINJ2Q9NZG7 142 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 CDH7Q9ULB5 785 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 AAR2Q9Y312 384 aaKnown RBP15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 NFS1Q9Y697 457 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 MTCH2Q9Y6C9 303 aa15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 NYNRINQ9P2P1 1898 aaKnown RBP15.2■□□□□ 0.02
CCDC88C-202ENST00000334448 E7EVH7 732 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 H0Y626 953 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 AP3B1O00203 1094 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 FCARP24071 287 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 MMP13P45452 471 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 GAD2Q05329 585 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 SLC10A7Q0GE19 358 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 PRPSAP1Q14558 356 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 LBRQ14739 615 aaKnown RBP15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 CCDC38Q502W7 563 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 INO80DQ53TQ3 878 aaPredicted RBP15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 FSCBQ5H9T9 825 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 FAM78AQ5JUQ0 283 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 FNBP1LQ5T0N5 605 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 RNF219Q5W0B1 726 aaPredicted RBP15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 LRRC8BQ6P9F7 803 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 CCDC25Q86WR0 208 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 MFN1Q8IWA4 741 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 DDI1Q8WTU0 396 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 IRF7Q92985 503 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 ACDQ96AP0 544 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 E2F7Q96AV8 911 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 IMP4Q96G21 291 aaKnown RBP15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 OXNAD1Q96HP4 312 aaPredicted RBP15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 MSLNLQ96KJ4 702 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 PWWP2AQ96N64 755 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 SH3GL2Q99962 352 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 MGME1Q9BQP7 344 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 WDR83Q9BRX9 315 aaKnown RBP15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 SLC2A11Q9BYW1 496 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 ATP13A1Q9HD20 1204 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 SAYSD1Q9NPB0 183 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 SPHK2Q9NRA0 654 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 KIAA1522Q9P206 1035 aaPredicted RBP15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 SEPT3Q9UH03 358 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 TEX264Q9Y6I9 313 aa15.19■□□□□ 0.02
CCDC88C-202ENST00000334448 DOCK6Q96HP0 2047 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 AGPSO00116 658 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 SCAMP3O14828 347 aaKnown RBP15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 HOXC11O43248 304 aaPredicted RBP15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 TBX10O75333 385 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 SPAG6O75602 509 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 TCEA3O75764 348 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 GEMP55040 296 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 GEMIN4P57678 1058 aaKnown RBP15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 ARF5P84085 180 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 PDIA2Q13087 525 aaKnown RBP15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 CBX2Q14781 532 aaPredicted RBP15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 MSS51Q4VC12 460 aa15.18■□□□□ 0.02
CCDC88C-202ENST00000334448 ATAT1Q5SQI0 421 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms