RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 KRT76Q01546 638 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 TRIM25Q14258 630 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 EMC2Q15006 297 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 ANKRD26P1Q6NSI1 321 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 MAMDC4Q6UXC1 1216 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 PODNQ7Z5L7 613 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 MCPH1Q8NEM0 835 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 CDKL2Q92772 493 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 RPL10LQ96L21 214 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 VPS45Q9NRW7 570 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 CNOT6Q9ULM6 557 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 FADS3Q9Y5Q0 445 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 A8MU76 341 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 DLGAP1O14490 977 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 ICAM1P05362 532 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 GPD1P21695 349 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 CNTFP26441 200 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 SOX11P35716 441 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 GRIA4P48058 902 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 ZNF143P52747 638 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 FSTL4Q6MZW2 842 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 CBR4Q8N4T8 237 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 CNDP1Q96KN2 507 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 PDCD2LQ9BRP1 358 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 FRMD8Q9BZ67 464 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 ZBTB26Q9HCK0 441 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 BCAP29Q9UHQ4 241 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 VPS51Q9UID3 782 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 DNAH12Q6ZR08 3092 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 SCN9AQ15858 1988 aa13.68□□□□□ -0.22
CCDC88C-201ENST00000331194 TRIM38O00635 465 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 ALDH1A2O94788 518 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 NR4A1P22736 598 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 SFNP31947 248 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 MAGEA6P43360 314 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 RPL14P50914 215 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 TUBA4AP68366 448 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 TNK2Q07912 1038 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 GLRA4Q5JXX5 417 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 ARHGEF16Q5VV41 709 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 THOC7Q6I9Y2 204 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 NIPA1Q7RTP0 329 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 STRA8Q7Z7C7 330 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 RAVER1Q8IY67 606 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 NAT16Q8N8M0 369 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 CANT1Q8WVQ1 401 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 TFAP2CQ92754 450 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 SNRNP25Q9BV90 132 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 ANKRD60Q9BZ19 345 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 TRPC7Q9HCX4 862 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 VPS28Q9UK41 221 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 CNOT11Q9UKZ1 510 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 ARID2Q68CP9 1835 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 ADGRA2Q96PE1 1338 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 ANKRD12Q6UB98 2062 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 A0A087WXM4 84 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 B4GAT1O43505 415 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 AVPR1AP37288 418 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 CCDC14Q49A88 953 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 GALNT18Q6P9A2 607 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 FAM183BPQ6ZVS7 135 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 CLIP3Q96DZ5 547 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 MPHOSPH6Q99547 160 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 XYLT2Q9H1B5 865 aa13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 COL11A2P13942 1736 aaPredicted RBP13.67□□□□□ -0.22
CCDC88C-201ENST00000331194 C2CD4BA6NLJ0 364 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 MT-CO1P00395 513 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 CYP2F1P24903 491 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 CSE1LP55060 971 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 RHDQ02161 417 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 DPYSQ14117 519 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 CYGBQ8WWM9 190 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 ASB9Q96DX5 294 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 MCRS1Q96EZ8 462 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 TMEM39BQ9GZU3 492 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 NMRAL1Q9HBL8 299 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 SEPT10Q9P0V9 454 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 C2P06681 752 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 ZNF12P17014 697 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 DLK2Q6UY11 383 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 RPS27LQ71UM5 84 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 HM13Q8TCT9 377 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 OMDQ99983 421 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 CNPY3Q9BT09 278 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 ELOVL4Q9GZR5 314 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 ZNF385DQ9H6B1 395 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 CCDC167Q9P0B6 97 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 AURKCQ9UQB9 309 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 ST14Q9Y5Y6 855 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 WDR46O15213 610 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 PAPSS1O43252 624 aaPredicted RBP13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 SULT1C4O75897 302 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 HOXD11P31277 338 aaPredicted RBP13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 POLR2IP36954 125 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 PLCL1Q15111 1095 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 SMUG1Q53HV7 270 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 STEAP4Q687X5 459 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 LRRC8EQ6NSJ5 796 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 NCKIPSDQ9NZQ3 722 aa13.66□□□□□ -0.22
CCDC88C-201ENST00000331194 TMED5Q9Y3A6 229 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms