RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 USP41Q3LFD5 358 aa13.68□□□□□ -0.22
SKA3-202ENST00000314759 MARK4Q96L34 752 aa13.68□□□□□ -0.22
SKA3-202ENST00000314759 ACOT8O14734 319 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 SUPT3HO75486 399 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 PDGFRBP09619 1106 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 INSRRP14616 1297 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 RPS12P25398 132 aaKnown RBP13.67□□□□□ -0.22
SKA3-202ENST00000314759 STT3AP46977 705 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 BST2Q10589 180 aaKnown RBP13.67□□□□□ -0.22
SKA3-202ENST00000314759 ARHGAP17Q68EM7 881 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 ZNF554Q86TJ5 538 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 FBXO16Q8IX29 292 aaPredicted RBP13.67□□□□□ -0.22
SKA3-202ENST00000314759 DEFB106AQ8N104 65 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 TMEM102Q8N9M5 508 aaPredicted RBP13.67□□□□□ -0.22
SKA3-202ENST00000314759 ANKRD52Q8NB46 1076 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 PDCD6IPQ8WUM4 868 aaKnown RBP13.67□□□□□ -0.22
SKA3-202ENST00000314759 ZMAT2Q96NC0 199 aaKnown RBP13.67□□□□□ -0.22
SKA3-202ENST00000314759 MCMBPQ9BTE3 642 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 BFARQ9NZS9 450 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 AKT3Q9Y243 479 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 SYNJ2BP-COX16A0A087WUM0 186 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 RNASEH2AO75792 299 aaKnown RBP13.67□□□□□ -0.22
SKA3-202ENST00000314759 TCN1P20061 433 aaPredicted RBP13.67□□□□□ -0.22
SKA3-202ENST00000314759 MATKP42679 507 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 NAGLUP54802 743 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 NR1H2P55055 460 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 CREB5Q02930 508 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 MPP3Q13368 585 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 CERCAMQ5T4B2 595 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 LIPMQ5VYY2 423 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 ZYG11AQ6WRX3 759 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 IFNLR1Q8IU57 520 aaPredicted RBP13.67□□□□□ -0.22
SKA3-202ENST00000314759 DNAAF3Q8N9W5 541 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 FAM156AQ8NDB6 213 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 VPS39Q96JC1 886 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 TASP1Q9H6P5 420 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 ZBTB26Q9HCK0 441 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 COX16Q9P0S2 106 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 KLHL8Q9P2G9 620 aaPredicted RBP13.67□□□□□ -0.22
SKA3-202ENST00000314759 BCAP29Q9UHQ4 241 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 SLC39A10Q9ULF5 831 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 GOLGA8TH3BQL2 631 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 BOLA2-SMG1P6H3BVE0 249 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 SLC22A2O15244 555 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 AP2A1O95782 977 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 CYP2C8P10632 490 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 SCNN1AP37088 669 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 RPL34P49207 117 aaKnown RBP13.67□□□□□ -0.22
SKA3-202ENST00000314759 SULT1E1P49888 294 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 CLCN2P51788 898 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 NSUN2Q08J23 767 aaKnown RBP eCLIP13.67□□□□□ -0.22
SKA3-202ENST00000314759 ART3Q13508 389 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 LPIN1Q14693 890 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 PPP2R5DQ14738 602 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 KYAT1Q16773 422 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 SLC25A52Q3SY17 297 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 NXNQ6DKJ4 435 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 NT5DC4Q86YG4 428 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 PSTKQ8IV42 348 aaKnown RBP13.67□□□□□ -0.22
SKA3-202ENST00000314759 NUP93Q8N1F7 819 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 DLG3Q92796 817 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 SLC2A11Q9BYW1 496 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 EFCAB1Q9HAE3 211 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 CHRAC1Q9NRG0 131 aa13.67□□□□□ -0.22
SKA3-202ENST00000314759 CITO14578 2027 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 ZNF638Q14966 1978 aaKnown RBP13.66□□□□□ -0.22
SKA3-202ENST00000314759 TIMM44O43615 452 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 TSPAN1O60635 241 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 LMO2P25791 158 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 PTPN3P26045 913 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 GLRBP48167 497 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 BCAT1P54687 386 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 OTUD1Q5VV17 481 aaPredicted RBP13.66□□□□□ -0.22
SKA3-202ENST00000314759 SETD3Q86TU7 594 aaPredicted RBP13.66□□□□□ -0.22
SKA3-202ENST00000314759 KCNMB4Q86W47 210 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 LSMEM2Q8N112 164 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 NPAS2Q99743 824 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 C1QTNF1Q9BXJ1 281 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 IARS2Q9NSE4 1012 aaKnown RBP13.66□□□□□ -0.22
SKA3-202ENST00000314759 C20orf96Q9NUD7 363 aaPredicted RBP13.66□□□□□ -0.22
SKA3-202ENST00000314759 RNF19AQ9NV58 838 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 TUBGCP4Q9UGJ1 667 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 RNF11Q9Y3C5 154 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 ZNF711Q9Y462 761 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 TCAF2A6NFQ2 919 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 TADA2AO75478 443 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 ZNF26P17031 533 aaPredicted RBP13.66□□□□□ -0.22
SKA3-202ENST00000314759 SAT1P21673 171 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 VARSP26640 1264 aaKnown RBP13.66□□□□□ -0.22
SKA3-202ENST00000314759 HSPA13P48723 471 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 CSRP3P50461 194 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 PRKAA1Q13131 559 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 FRG1Q14331 258 aaKnown RBP13.66□□□□□ -0.22
SKA3-202ENST00000314759 GRM3Q14832 879 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 NRF1Q16656 503 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 DCAF6Q58WW2 860 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 FNDC8Q8TC99 324 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 FAM149B1Q96BN6 582 aa13.66□□□□□ -0.22
SKA3-202ENST00000314759 TMA16Q96EY4 203 aaKnown RBP13.66□□□□□ -0.22
SKA3-202ENST00000314759 APOL2Q9BQE5 337 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms