RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 PCNX2A6NKB5 2137 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 GOLGA6L19H0YKK7 550 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 OPHN1O60890 802 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 RTN2O75298 545 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 GJB3O75712 270 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 ZMPSTE24O75844 475 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 CTSLP07711 333 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 RHOQP17081 205 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 GOT1P17174 413 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 CD27P26842 260 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 CSNK1EP49674 416 aaKnown RBP16.68■□□□□ 0.26
LSM1-201ENST00000311351 UBASH3AP57075 661 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 PPP2CBP62714 309 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 PPP2CAP67775 309 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 ARF5P84085 180 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 SCAPQ12770 1279 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 SFSWAPQ12872 951 aaKnown RBP16.68■□□□□ 0.26
LSM1-201ENST00000311351 SEMA3BQ13214 749 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 FIGNQ5HY92 759 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 EFHC2Q5JST6 749 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 ZNF783Q6ZMS7 281 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 SLFN11Q7Z7L1 901 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 DSG4Q86SJ6 1040 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 CHST14Q8NCH0 376 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 OR14C36Q8NHC7 312 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 PIP4K2CQ8TBX8 421 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 CNPY3Q9BT09 278 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 IL21RQ9HBE5 538 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 DNAAF2Q9NVR5 837 aaKnown RBP16.68■□□□□ 0.26
LSM1-201ENST00000311351 TMEM248Q9NWD8 314 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 DNAI1Q9UI46 699 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 CEP295Q9C0D2 2601 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 ACACBO00763 2458 aa16.68■□□□□ 0.26
LSM1-201ENST00000311351 LRRC72A6NJI9 287 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 C1QTNF3-AMACRE9PGA6 284 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 RNF103O00237 685 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 MCF2LO15068 1137 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 ALOX15BO15296 676 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 CSRP1P21291 193 aaKnown RBP16.67■□□□□ 0.26
LSM1-201ENST00000311351 MAPKAPK2P49137 400 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 ZNF252P-AS1Q0IIN9 211 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 MAMLD1Q13495 774 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 TDRD12Q587J7 1177 aaKnown RBP16.67■□□□□ 0.26
LSM1-201ENST00000311351 PLEKHA7Q6IQ23 1121 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.67■□□□□ 0.26
LSM1-201ENST00000311351 TMC6Q7Z403 805 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 OR2A12Q8NGT7 310 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 OR2T34Q8NGX1 318 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 VCPIP1Q96JH7 1222 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 SLC6A18Q96N87 628 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 EDEM3Q9BZQ6 932 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 TRIM7Q9C029 511 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 EBF2Q9HAK2 575 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 GPATCH2LQ9NWQ4 482 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 IFNKQ9P0W0 207 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 PPM1HQ9ULR3 514 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 CABIN1Q9Y6J0 2220 aa16.67■□□□□ 0.26
LSM1-201ENST00000311351 C10orf142B7Z368 130 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 CD59P13987 128 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 PSMA2P25787 234 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 SERPINH1P50454 418 aaKnown RBP16.66■□□□□ 0.26
LSM1-201ENST00000311351 CLCN6P51797 869 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 AFF3P51826 1226 aaKnown RBP16.66■□□□□ 0.26
LSM1-201ENST00000311351 CNTN1Q12860 1018 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 AGBL4Q5VU57 503 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 FAM46CQ5VWP2 391 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 PPP1R2P3Q6NXS1 205 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 PIP4P1Q86T03 277 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 GRIN3AQ8TCU5 1115 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 FAM131CQ96AQ9 280 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 ZNF653Q96CK0 615 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 ACE2Q9BYF1 805 aaPredicted RBP16.66■□□□□ 0.26
LSM1-201ENST00000311351 ZDHHC5Q9C0B5 715 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 PARVAQ9NVD7 372 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 FZD10Q9ULW2 581 aa16.66■□□□□ 0.26
LSM1-201ENST00000311351 FNDC3AQ9Y2H6 1198 aaKnown RBP16.66■□□□□ 0.26
LSM1-201ENST00000311351 FCF1Q9Y324 198 aaKnown RBP16.66■□□□□ 0.26
LSM1-201ENST00000311351 A0A1W2PPC4 97 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 CREB3O43889 395 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 ZNF821O75541 412 aaPredicted RBP16.65■□□□□ 0.26
LSM1-201ENST00000311351 FTLP02792 175 aaPredicted RBP16.65■□□□□ 0.26
LSM1-201ENST00000311351 EPHB2P29323 1055 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 L1CAMP32004 1257 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 CHRNA3P32297 505 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 GRIA4P48058 902 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 KIF19Q2TAC6 998 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 HGSNATQ68CP4 663 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 RETSATQ6NUM9 610 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 LEKR1Q6ZMV7 388 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 DPY19L3Q6ZPD9 716 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 CPLX3Q8WVH0 158 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 ARHGEF2Q92974 986 aaKnown RBP16.65■□□□□ 0.26
LSM1-201ENST00000311351 ARRDC3Q96B67 414 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 CCDC114Q96M63 670 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 PEBP4Q96S96 227 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 GAREM1Q9H706 876 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 OSGEPQ9NPF4 335 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 CNOT8Q9UFF9 292 aaKnown RBP16.65■□□□□ 0.26
LSM1-201ENST00000311351 SNX11Q9Y5W9 270 aa16.65■□□□□ 0.26
LSM1-201ENST00000311351 TBC1D3DA0A087WVF3 549 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms