RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 MPZL3Q6UWV2 235 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 FAM131AQ6UXB0 335 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 ARCQ7LC44 396 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 TRMT11Q7Z4G4 463 aaKnown RBP14.05□□□□□ -0.16
CSPG4-201ENST00000308508 ARHGAP20Q9P2F6 1191 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 ANGPT4Q9Y264 503 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 CYB561D2O14569 222 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 PIGNO95427 931 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 SERPINA6P08185 405 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 UGT2B15P54855 530 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 CBFBQ13951 182 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 THOC7Q6I9Y2 204 aaKnown RBP14.05□□□□□ -0.16
CSPG4-201ENST00000308508 ISLR2Q6UXK2 745 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 SLCO6A1Q86UG4 719 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 MAGEB10Q96LZ2 347 aaPredicted RBP14.05□□□□□ -0.16
CSPG4-201ENST00000308508 AAASQ9NRG9 546 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 MORF4L1Q9UBU8 362 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 CST1P01037 141 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 ADRA2BP18089 450 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 ADRA1DP25100 572 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 CCR1P32246 355 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 RAP1GAPP47736 663 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 FOXR1Q6PIV2 292 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 MCFD2Q8NI22 146 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 FAR1Q8WVX9 515 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 SLC35C2Q9NQQ7 365 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 SNX6Q9UNH7 406 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 PCDHGA3Q9Y5H0 932 aa14.05□□□□□ -0.16
CSPG4-201ENST00000308508 MED24O75448 989 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 RPL3P39023 403 aaKnown RBP14.04□□□□□ -0.16
CSPG4-201ENST00000308508 SKIV2LQ15477 1246 aaKnown RBP14.04□□□□□ -0.16
CSPG4-201ENST00000308508 ALG11Q2TAA5 492 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 AAGABQ6PD74 315 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 SLC5A5Q92911 643 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 MGAT4AQ9UM21 535 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 ARHGEF33A8MVX0 844 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 MBL2P11226 248 aaPredicted RBP14.04□□□□□ -0.16
CSPG4-201ENST00000308508 ATN1P54259 1190 aaPredicted RBP14.04□□□□□ -0.16
CSPG4-201ENST00000308508 CAMK1Q14012 370 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 DSG4Q86SJ6 1040 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 RAB43Q86YS6 212 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 MCOLN2Q8IZK6 566 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 PCDH20Q8N6Y1 951 aaKnown RBP14.04□□□□□ -0.16
CSPG4-201ENST00000308508 RP9Q8TA86 221 aaKnown RBP14.04□□□□□ -0.16
CSPG4-201ENST00000308508 RAET1EQ8TD07 263 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 TCF12Q99081 682 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 N6AMT1Q9Y5N5 214 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 TFECO14948 347 aaPredicted RBP14.04□□□□□ -0.16
CSPG4-201ENST00000308508 APOC1P02654 83 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 BHLHB9Q6PI77 547 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 C17orf50Q8WW18 174 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 TRNAU1APQ9NX07 287 aaKnown RBP14.04□□□□□ -0.16
CSPG4-201ENST00000308508 ZNF224Q9NZL3 707 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 SLC12A4Q9UP95 1085 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 OVOS2A0A0G2JMS6 1433 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 TCEA3O75764 348 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 SLC25A27O95847 323 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 SPIDRQ14159 915 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 CDKAL1Q5VV42 579 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 SP8Q8IXZ3 490 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 ZNF655Q8N720 491 aaPredicted RBP14.04□□□□□ -0.16
CSPG4-201ENST00000308508 ZSWIM2Q8NEG5 633 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 IL22Q9GZX6 179 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 QTRT2Q9H974 415 aaKnown RBP14.04□□□□□ -0.16
CSPG4-201ENST00000308508 KBTBD4Q9NVX7 518 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 CBX4O00257 560 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 ZBTB14O43829 449 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 MLYCDO95822 493 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 TYMPP19971 482 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 ORC1Q13415 861 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 SCARF1Q14162 830 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 KAT5Q92993 513 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 CCDC115Q96NT0 180 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 CLCC1Q96S66 551 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 CDHR5Q9HBB8 845 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 GPATCH2LQ9NWQ4 482 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 DHRS12A0PJE2 317 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 CTDNEP1O95476 244 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 ATF6P18850 670 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 VBP1P61758 197 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 RBM43Q6ZSC3 357 aaKnown RBP14.04□□□□□ -0.16
CSPG4-201ENST00000308508 ABRAQ8N0Z2 381 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 C12orf4Q9NQ89 552 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 CATSPERZQ9NTU4 200 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 PRPF19Q9UMS4 504 aaKnown RBP14.04□□□□□ -0.16
CSPG4-201ENST00000308508 LRRC7Q96NW7 1537 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 G3V2T6 193 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 UPP2O95045 317 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 CBX5P45973 191 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 ERVK-9P63128 1117 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 ACSM2AQ08AH3 577 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 MED22Q15528 200 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 ACSM2BQ68CK6 577 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 RNF44Q7L0R7 432 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 NDNQ99608 321 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 FAM126AQ9BYI3 521 aaPredicted RBP14.04□□□□□ -0.16
CSPG4-201ENST00000308508 PRDM16Q9HAZ2 1276 aa14.04□□□□□ -0.16
CSPG4-201ENST00000308508 KAT6AQ92794 2004 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 CHADO15335 359 aa14.03□□□□□ -0.16
CSPG4-201ENST00000308508 SASH3O75995 380 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms