RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ERVK-10P10266 1014 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 EPCAMP16422 314 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 DSC2Q02487 901 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 AFMIDQ63HM1 303 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 LILRA6Q6PI73 481 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 ZFRQ96KR1 1074 aaKnown RBP16.81■□□□□ 0.28
USP4-201ENST00000265560 TSGA13Q96PP4 275 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 CYTH2Q99418 400 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.81■□□□□ 0.28
USP4-201ENST00000265560 TRHDEQ9UKU6 1024 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 RPS6KL1Q9Y6S9 549 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 DRGXA6NNA5 263 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 GLUD1P00367 558 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 PBX2P40425 430 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 POU6F1Q14863 301 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 FSCBQ5H9T9 825 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 SNX30Q5VWJ9 437 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 MRPL43Q8N983 215 aaKnown RBP16.81■□□□□ 0.28
USP4-201ENST00000265560 ADAMTS19Q8TE59 1207 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 DCAKDQ8WVC6 231 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 ATXN7L3BQ96GX2 97 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 FICDQ9BVA6 458 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 GLOD4Q9HC38 313 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 IKBKGQ9Y6K9 419 aa16.81■□□□□ 0.28
USP4-201ENST00000265560 TCEA3O75764 348 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 NRG1Q02297 640 aaPredicted RBP16.8■□□□□ 0.28
USP4-201ENST00000265560 KCTD11Q693B1 232 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 ITPRIPL1Q6GPH6 555 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 LINGO4Q6UY18 593 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 TPGS1Q6ZTW0 290 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 HERVK_113Q902F9 699 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 TRMT2BQ96GJ1 504 aaKnown RBP16.8■□□□□ 0.28
USP4-201ENST00000265560 TRABDQ9H4I3 376 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 PSMC3IPQ9P2W1 217 aaPredicted RBP16.8■□□□□ 0.28
USP4-201ENST00000265560 PPARGC1AQ9UBK2 798 aaKnown RBP16.8■□□□□ 0.28
USP4-201ENST00000265560 CCL26Q9Y258 94 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 MUSKO15146 869 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 C1QAP02745 245 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 KRT4P19013 534 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 CD86P42081 329 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 TADA2BQ86TJ2 420 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 PGBD5Q8N414 524 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 ARFGAP2Q8N6H7 521 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 IL12RB2Q99665 862 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 TLR9Q9NR96 1032 aa16.8■□□□□ 0.28
USP4-201ENST00000265560 INTS9Q9NV88 658 aaKnown RBP16.8■□□□□ 0.28
USP4-201ENST00000265560 E2F8A0AVK6 867 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 CBX4O00257 560 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 MTSS1O43312 755 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 INHBAP08476 426 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 GMPRP36959 345 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 CBX2Q14781 532 aaPredicted RBP16.79■□□□□ 0.28
USP4-201ENST00000265560 ADGRF1Q5T601 910 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 MARC1Q5VT66 337 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 TRABD2AQ86V40 505 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 CARNMT1Q8N4J0 409 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 BCAS4Q8TDM0 211 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 PSAT1Q9Y617 370 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 NOTCH4Q99466 2003 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 KPNA1P52294 538 aaPredicted RBP16.79■□□□□ 0.28
USP4-201ENST00000265560 NIPAL4Q0D2K0 466 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 MROH9Q5TGP6 573 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 TAOK1Q7L7X3 1001 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 LGALS13Q9UHV8 139 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 HCFC2Q9Y5Z7 792 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 SHHQ15465 462 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 ITIH5Q86UX2 942 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 SPNS2Q8IVW8 549 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 GSDMBQ8TAX9 411 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 WFDC5Q8TCV5 224 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 AZIN2Q96A70 460 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 ZNF669Q96BR6 464 aaPredicted RBP16.79■□□□□ 0.28
USP4-201ENST00000265560 CDK5RAP1Q96SZ6 601 aaKnown RBP16.79■□□□□ 0.28
USP4-201ENST00000265560 STMN4Q9H169 189 aaPredicted RBP16.79■□□□□ 0.28
USP4-201ENST00000265560 MAN1C1Q9NR34 630 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 SAMD15Q9P1V8 674 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 CFAP97Q9P2B7 532 aa16.79■□□□□ 0.28
USP4-201ENST00000265560 WASH4PA8MWX3 477 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 SHOX2O60902 331 aaPredicted RBP16.78■□□□□ 0.28
USP4-201ENST00000265560 NDST2P52849 883 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 PGGT1BP53609 377 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 SERINC3Q13530 473 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 PRPSAP1Q14558 356 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 CRYMQ14894 314 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 PPM1LQ5SGD2 360 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 LRRC6Q86X45 466 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 TMC8Q8IU68 726 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 OVCA2Q8WZ82 227 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 MRPS31Q92665 395 aaKnown RBP16.78■□□□□ 0.28
USP4-201ENST00000265560 VAT1Q99536 393 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 SLC46A2Q9BY10 475 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 PSD3Q9NYI0 1048 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 H3BNC9 293 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 SNAP91O60641 907 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 TBL1XO60907 577 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 TOP3BO95985 862 aaKnown RBP16.78■□□□□ 0.28
USP4-201ENST00000265560 RPA3P35244 121 aaPredicted RBP16.78■□□□□ 0.28
USP4-201ENST00000265560 KLHL38Q2WGJ6 581 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 ADGRD1Q6QNK2 874 aa16.78■□□□□ 0.28
USP4-201ENST00000265560 CROCCP2Q86T23 111 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms