RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 TOMM70O94826 608 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 ENDOD1O94919 500 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 ATG7O95352 703 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 SUPT20HL2P0C7V6 817 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 GLDCP23378 1020 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 MAP4P27816 1152 aaKnown RBP13.35□□□□□ -0.27
NUP54-201ENST00000264883 ART3Q13508 389 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 MTERF2Q49AM1 385 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 CYP4A22Q5TCH4 519 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 CCDC60Q8IWA6 550 aaPredicted RBP13.35□□□□□ -0.27
NUP54-201ENST00000264883 ZC3H7AQ8IWR0 971 aaKnown RBP13.35□□□□□ -0.27
NUP54-201ENST00000264883 ARFGAP1Q8N6T3 406 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 FAM156AQ8NDB6 213 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 ACMSDQ8TDX5 336 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 TFAP2CQ92754 450 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 ALPK1Q96QP1 1244 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 OR52B2Q96RD2 323 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 POLR1BQ9H9Y6 1135 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 TCF7L2Q9NQB0 619 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 DUS2Q9NX74 493 aaKnown RBP13.35□□□□□ -0.27
NUP54-201ENST00000264883 POU2F3Q9UKI9 436 aa13.35□□□□□ -0.27
NUP54-201ENST00000264883 GLTPD2A6NH11 291 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 LRRIQ4A6NIV6 560 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 ADM5C9JUS6 153 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 TRUB2O95900 331 aaKnown RBP13.34□□□□□ -0.27
NUP54-201ENST00000264883 CCNA2P20248 432 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 ACTR2P61160 394 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 DUOXA2Q1HG44 320 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 PTPN20Q4JDL3 420 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 ZNF618Q5T7W0 954 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 FAXCQ5TGI0 409 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 SLC9A4Q6AI14 798 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 TRMT10BQ6PF06 316 aaKnown RBP13.34□□□□□ -0.27
NUP54-201ENST00000264883 MAMDC4Q6UXC1 1216 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 UNC5AQ6ZN44 842 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 ZBTB49Q6ZSB9 765 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 CYS1Q717R9 158 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 PTAR1Q7Z6K3 402 aaPredicted RBP13.34□□□□□ -0.27
NUP54-201ENST00000264883 TMCO5AQ8N6Q1 288 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 NSUN6Q8TEA1 469 aaKnown RBP13.34□□□□□ -0.27
NUP54-201ENST00000264883 DEPDC1BQ8WUY9 529 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 SLC7A3Q8WY07 619 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 DCPSQ96C86 337 aaKnown RBP13.34□□□□□ -0.27
NUP54-201ENST00000264883 ZNF641Q96N77 438 aaPredicted RBP13.34□□□□□ -0.27
NUP54-201ENST00000264883 TARS2Q9BW92 718 aaKnown RBP13.34□□□□□ -0.27
NUP54-201ENST00000264883 RNPEPQ9H4A4 650 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 FBXO40Q9UH90 709 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 ANKRD34BA5PLL1 514 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 FAM159BA6NKW6 160 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 AKAP10O43572 662 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 BCL10O95999 233 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 TGM2P21980 687 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 NUMBP49757 651 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 CCT8P50990 548 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 KCNT1Q5JUK3 1230 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 USP50Q70EL3 339 aaPredicted RBP13.34□□□□□ -0.27
NUP54-201ENST00000264883 CYP2U1Q7Z449 544 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 SULF1Q8IWU6 871 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 ZNF781Q8N8C0 355 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 JOSD2Q8TAC2 188 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 CNDP1Q96KN2 507 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 RPAP3Q9H6T3 665 aaPredicted RBP13.34□□□□□ -0.27
NUP54-201ENST00000264883 ZFYVE28Q9HCC9 887 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 RAB6BQ9NRW1 208 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.34□□□□□ -0.273e-6■■■■□ 20.6
NUP54-201ENST00000264883 TMEM9Q9P0T7 183 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 USP18Q9UMW8 372 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 AFG3L2Q9Y4W6 797 aa13.34□□□□□ -0.27
NUP54-201ENST00000264883 WDR90Q96KV7 1748 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 GOLGA8QA0A0J9YX86 632 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 GOLGA8OA6NCC3 632 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 C19orf81C9J6K1 198 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 GOLGA8NF8WBI6 632 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 TRIM38O00635 465 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 SEC24DO94855 1032 aaPredicted RBP13.33□□□□□ -0.28
NUP54-201ENST00000264883 GNL1P36915 607 aaPredicted RBP13.33□□□□□ -0.28
NUP54-201ENST00000264883 HNRNPFP52597 415 aaKnown RBP13.33□□□□□ -0.28
NUP54-201ENST00000264883 EFNA5P52803 228 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 MYL6P60660 151 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 TIGD2Q4W5G0 525 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 FAM182AQ5T1J6 154 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 XYLT1Q86Y38 959 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 MAPK15Q8TD08 544 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 ZC3H15Q8WU90 426 aaKnown RBP13.33□□□□□ -0.28
NUP54-201ENST00000264883 TFAP2BQ92481 460 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 ZBTB45Q96K62 511 aaPredicted RBP13.33□□□□□ -0.28
NUP54-201ENST00000264883 HERC2P3Q9BVR0 1158 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 SDCBP2Q9H190 292 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 NOL11Q9H8H0 719 aaKnown RBP13.33□□□□□ -0.28
NUP54-201ENST00000264883 DCDC2Q9UHG0 476 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 IFT52Q9Y366 437 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 SCN4AP35499 1836 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 PTPRFP10586 1907 aa13.33□□□□□ -0.28
NUP54-201ENST00000264883 BCLAF3A2AJT9 711 aaKnown RBP13.32□□□□□ -0.28
NUP54-201ENST00000264883 TRIM64A6NGJ6 449 aa13.32□□□□□ -0.28
NUP54-201ENST00000264883 SLC15A5A6NIM6 579 aa13.32□□□□□ -0.28
NUP54-201ENST00000264883 CLPXO76031 633 aa13.32□□□□□ -0.28
NUP54-201ENST00000264883 VAPBO95292 243 aa13.32□□□□□ -0.28
NUP54-201ENST00000264883 HSPA4LO95757 839 aa13.32□□□□□ -0.28
NUP54-201ENST00000264883 S100BP04271 92 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms