RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SNX6Q9UNH7 406 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 TPRKBQ9Y3C4 175 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 WWP2O00308 870 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 PRMT3O60678 531 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 FSBPO95073 299 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 SHBGP04278 402 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 KDELR1P24390 212 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 ALDH9A1P49189 494 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 CNTN2Q02246 1040 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 COL9A3Q14050 684 aaPredicted RBP19.41■□□□□ 0.7
UPF1-201ENST00000262803 ZCCHC23Q6ZST2 131 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 FUKQ8N0W3 1084 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 APBA2Q99767 749 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 SORCS3Q9UPU3 1222 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 ARHGEF28Q8N1W1 1705 aaKnown RBP19.41■□□□□ 0.7
UPF1-201ENST00000262803 MEIS2O14770 477 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 ANXA5P08758 320 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 NOS3P29474 1203 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 CACNA2D1P54289 1103 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 SPIDRQ14159 915 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 CRY1Q16526 586 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 ZDHHC20Q5W0Z9 365 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 MREGQ8N565 214 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 METTL6Q8TCB7 284 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 PCYOX1Q9UHG3 505 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 COL1A2P08123 1366 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 MROH1Q8NDA8 1641 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 MEI4A8MW99 385 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 OR6A2O95222 327 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 FTH1P02794 183 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 CNGA2Q16280 664 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 GRIK5Q16478 980 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 TCHHL1Q5QJ38 904 aaPredicted RBP19.41■□□□□ 0.7
UPF1-201ENST00000262803 AFTPHQ6ULP2 937 aa19.41■□□□□ 0.7
UPF1-201ENST00000262803 TMEM131LA2VDJ0 1609 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 ANKDD1BA6NHY2 528 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 SEC22BO75396 215 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 BOP1Q14137 746 aaKnown RBP19.4■□□□□ 0.7
UPF1-201ENST00000262803 TBCELQ5QJ74 424 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 PAGE2Q7Z2X7 111 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 FNDC5Q8NAU1 212 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 WDR36Q8NI36 951 aaKnown RBP19.4■□□□□ 0.7
UPF1-201ENST00000262803 USP6NLQ92738 828 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 RNFT2Q96EX2 444 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 ADAM2Q99965 735 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 RNF208Q9H0X6 261 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 SERHL2Q9H4I8 314 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 SERHLQ9NQF3 203 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 COPG2Q9UBF2 871 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 DERAQ9Y315 318 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 ADRB2P07550 413 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 PTPN1P18031 435 aaKnown RBP19.4■□□□□ 0.7
UPF1-201ENST00000262803 POU1F1P28069 291 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 ACSM2AQ08AH3 577 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 TRAF2Q12933 501 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 ITGB3BPQ13352 177 aaPredicted RBP19.4■□□□□ 0.7
UPF1-201ENST00000262803 TRIM16LQ309B1 348 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 SAMD4BQ5PRF9 694 aaKnown RBP19.4■□□□□ 0.7
UPF1-201ENST00000262803 ACSM2BQ68CK6 577 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 ZNF470Q6ECI4 717 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 NECAB2Q7Z6G3 386 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 CKAP2Q8WWK9 683 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 CENPTQ96BT3 561 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 OMDQ99983 421 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 SAR1AQ9NR31 198 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 POLR1DQ9Y2S0 133 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 AUHQ13825 339 aaKnown RBP19.4■□□□□ 0.7
UPF1-201ENST00000262803 DHFR2Q86XF0 187 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 C15orf41Q9Y2V0 281 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 GIT1Q9Y2X7 761 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 CYP3A7-CYP3A51PA0A087WV96 503 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 BTNL10A8MVZ5 291 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 DDNO94850 711 aaPredicted RBP19.4■□□□□ 0.7
UPF1-201ENST00000262803 VAPBO95292 243 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 CALCAP01258 141 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 CYP1A2P05177 515 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 CYP3A7P24462 503 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 CLCN5P51795 746 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 GTF2BQ00403 316 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 C19orf18Q8NEA5 215 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 ADAM32Q8TC27 787 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 EPB41L4BQ9H329 900 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 ATP13A3Q9H7F0 1226 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 MID1IP1Q9NPA3 183 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 LRCH1Q9Y2L9 728 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 SNX8Q9Y5X2 465 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 MST1RQ04912 1400 aa19.4■□□□□ 0.7
UPF1-201ENST00000262803 NEURL4Q96JN8 1562 aa19.39■□□□□ 0.7
UPF1-201ENST00000262803 KPNA3O00505 521 aaPredicted RBP19.39■□□□□ 0.7
UPF1-201ENST00000262803 S100A3P33764 101 aa19.39■□□□□ 0.7
UPF1-201ENST00000262803 TMED10P49755 219 aaKnown RBP19.39■□□□□ 0.7
UPF1-201ENST00000262803 SMIM11AP58511 58 aa19.39■□□□□ 0.7
UPF1-201ENST00000262803 COPZ1P61923 177 aa19.39■□□□□ 0.7
UPF1-201ENST00000262803 MAMLD1Q13495 774 aa19.39■□□□□ 0.7
UPF1-201ENST00000262803 FAM228AQ86W67 206 aa19.39■□□□□ 0.7
UPF1-201ENST00000262803 GPSM1Q86YR5 675 aa19.39■□□□□ 0.7
UPF1-201ENST00000262803 FAM71AQ8IYT1 594 aa19.39■□□□□ 0.7
UPF1-201ENST00000262803 ZNF513Q8N8E2 541 aaPredicted RBP19.39■□□□□ 0.7
UPF1-201ENST00000262803 SNRNP27Q8WVK2 155 aaKnown RBP19.39■□□□□ 0.7
UPF1-201ENST00000262803 DLG3Q92796 817 aa19.39■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms