RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 TAF1BQ53T94 588 aaPredicted RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 HSP90AA5PQ58FG0 334 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 PCID2Q5JVF3 399 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 PDPK2PQ6A1A2 396 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 FUT10Q6P4F1 479 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 NPAS4Q8IUM7 802 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 UMODL1-AS1Q8N2C9 162 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 DCLK2Q8N568 766 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 IPMKQ8NFU5 416 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 GPR152Q8TDT2 470 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 BTN2A3PQ96KV6 586 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 SPATA17Q96L03 361 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 RAB3IPQ96QF0 476 aaPredicted RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 AGAP2Q99490 1192 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 KIFC1Q9BW19 673 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 ZYG11BQ9C0D3 744 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 KCNK13Q9HB14 408 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 SAR1AQ9NR31 198 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 SNX15Q9NRS6 342 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 COMMD8Q9NX08 183 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 PPARGC1AQ9UBK2 798 aaKnown RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 HEY2Q9UBP5 337 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 MTMR11A4FU01 709 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 TIMM44O43615 452 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 FKTNO75072 461 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 TOP3BO95985 862 aaKnown RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 MT-CYBP00156 380 aaPredicted RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 HLA-DQB2P05538 268 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 TARSP26639 723 aaKnown RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 NMBRP28336 390 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 IRX4P78413 519 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 OCRLQ01968 901 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 ZBTB16Q05516 673 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 MPP3Q13368 585 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 FASTKD1Q53R41 847 aaKnown RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 MS4A13Q5J8X5 152 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 C10orf120Q5SQS8 335 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 FSTL4Q6MZW2 842 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 CLNKQ7Z7G1 428 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 CRLF3Q8IUI8 442 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 CCDC117Q8IWD4 279 aaPredicted RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 KIF2BQ8N4N8 673 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 C2orf15Q8WU43 125 aaKnown RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 ISL2Q96A47 359 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 SEPT5Q99719 369 aaPredicted RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 TMEM175Q9BSA9 504 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 FICDQ9BVA6 458 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 FSD1LQ9BXM9 530 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 OXCT2Q9BYC2 517 aaPredicted RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 PRDM5Q9NQX1 630 aaPredicted RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 ENTPD7Q9NQZ7 604 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 IARS2Q9NSE4 1012 aaKnown RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 WDR70Q9NW82 654 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 MARCH2Q9P0N8 246 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 IPO11Q9UI26 975 aaKnown RBP13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 EMCNQ9ULC0 261 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 TRIM33Q9UPN9 1127 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 SLC27A5Q9Y2P5 690 aa13.16□□□□□ -0.3
SPTLC1-201ENST00000262554 MIA3Q5JRA6 1907 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 HAX1O00165 279 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 PLIN3O60664 434 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 HNRNPCL1O60812 293 aaKnown RBP13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 SNNO75324 88 aaPredicted RBP13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 SOAT2O75908 522 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 MPOP05164 745 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 HAPLN1P10915 354 aaPredicted RBP13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 MAP2K2P36507 400 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 HADHAP40939 763 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 MAGEA12P43365 314 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 RPL10AP62906 217 aaKnown RBP13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 CDK18Q07002 472 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 TAF10Q12962 218 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 PSMD5Q16401 504 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 ACBD5Q5T8D3 534 aaPredicted RBP13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 C16orf46Q6P387 395 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 PKN3Q6P5Z2 889 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 RNF19BQ6ZMZ0 732 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 ANKS3Q6ZW76 656 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 MIB1Q86YT6 1006 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 SUGP1Q8IWZ8 645 aaKnown RBP13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 ZNF683Q8IZ20 524 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 PPHLN1Q8NEY8 458 aaKnown RBP13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 INPP5DQ92835 1189 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 ATXN7L3BQ96GX2 97 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 ZNF419Q96HQ0 510 aaPredicted RBP13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 TUBB6Q9BUF5 446 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 LRMDAQ9H2I8 198 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 THAP1Q9NVV9 213 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 TMEM248Q9NWD8 314 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 KCNK4Q9NYG8 393 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 HAO1Q9UJM8 370 aa13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 MRPL42Q9Y6G3 142 aaKnown RBP13.15□□□□□ -0.3
SPTLC1-201ENST00000262554 TBKBP1A7MCY6 615 aa13.14□□□□□ -0.31
SPTLC1-201ENST00000262554 DNAJC6O75061 913 aa13.14□□□□□ -0.31
SPTLC1-201ENST00000262554 HAUS5O94927 633 aa13.14□□□□□ -0.31
SPTLC1-201ENST00000262554 PROCP04070 461 aa13.14□□□□□ -0.31
SPTLC1-201ENST00000262554 GALTP07902 379 aa13.14□□□□□ -0.31
SPTLC1-201ENST00000262554 KRT16P08779 473 aa13.14□□□□□ -0.31
SPTLC1-201ENST00000262554 MYL2P10916 166 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms