RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 LIASO43766 372 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 JAK1P23458 1154 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 ATP5F1P24539 256 aaPredicted RBP13.75□□□□□ -0.21
SF3A1-201ENST00000215793 LRPAP1P30533 357 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 CLCN5P51795 746 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 GSTA3Q16772 222 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 DGKKQ5KSL6 1271 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 KRT73Q86Y46 540 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 CAMK1DQ8IU85 385 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 MREGQ8N565 214 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 CERS2Q96G23 380 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 ADAM2Q99965 735 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 PTPRHQ9HD43 1115 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 ANAPC2Q9UJX6 822 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 SNX3O60493 162 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 MTA2O94776 668 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 ZSCAN5DPP0CG00 497 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 GLRA2P23416 452 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 RPA3P35244 121 aaPredicted RBP13.75□□□□□ -0.21
SF3A1-201ENST00000215793 ADCYAP1R1P41586 468 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 PSEN1P49768 467 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 IRF8Q02556 426 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 TIMM50Q3ZCQ8 353 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 SETMARQ53H47 684 aaPredicted RBP13.75□□□□□ -0.21
SF3A1-201ENST00000215793 HLA-DQA1Q5Y7H0 255 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 ZNF662Q6ZS27 426 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 POLNQ7Z5Q5 900 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 ANKRD49Q8WVL7 239 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 ATL1Q8WXF7 558 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 PRCCQ92733 491 aaPredicted RBP13.75□□□□□ -0.21
SF3A1-201ENST00000215793 NACC2Q96BF6 587 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 ZBTB10Q96DT7 871 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 VMP1Q96GC9 406 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 RNF157Q96PX1 679 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 REEP1Q9H902 201 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 TDRKHQ9Y2W6 561 aaKnown RBP13.75□□□□□ -0.21
SF3A1-201ENST00000215793 MAP2K7O14733 419 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 STX11O75558 287 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 CABYRO75952 493 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 PSMB4P28070 264 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 TTKP33981 857 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 PPIDQ08752 370 aaKnown RBP13.75□□□□□ -0.21
SF3A1-201ENST00000215793 PDZK1Q5T2W1 519 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 TMEM161BQ8NDZ6 487 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 UROC1Q96N76 676 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 ATAD3AQ9NVI7 634 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 PQBP1O60828 265 aaKnown RBP13.75□□□□□ -0.21
SF3A1-201ENST00000215793 SASH3O75995 380 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 FSBPO95073 299 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 AMHP03971 560 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 HK2P52789 917 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 C15orf59Q2T9L4 293 aaPredicted RBP13.75□□□□□ -0.21
SF3A1-201ENST00000215793 SPANXN2Q5MJ10 180 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 CELF3Q5SZQ8 465 aaKnown RBP13.75□□□□□ -0.21
SF3A1-201ENST00000215793 BBS12Q6ZW61 710 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 ARCQ7LC44 396 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 ZNF605Q86T29 641 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 CLVS1Q8IUQ0 354 aaPredicted RBP13.75□□□□□ -0.21
SF3A1-201ENST00000215793 OR52K1Q8NGK4 314 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 PSME2Q9UL46 239 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 ENTPD4Q9Y227 616 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 FAM50BQ9Y247 325 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 DIP2CQ9Y2E4 1556 aa13.75□□□□□ -0.21
SF3A1-201ENST00000215793 NCANO14594 1321 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 ITGAVP06756 1048 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 PTPRAP18433 802 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 DLG4P78352 724 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 INO80DQ53TQ3 878 aaPredicted RBP13.74□□□□□ -0.21
SF3A1-201ENST00000215793 STXBP5Q5T5C0 1151 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 FOXR2Q6PJQ5 311 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 YTHDF3Q7Z739 585 aaKnown RBP13.74□□□□□ -0.21
SF3A1-201ENST00000215793 PHF13Q86YI8 300 aaPredicted RBP13.74□□□□□ -0.21
SF3A1-201ENST00000215793 ALLCQ8N6M5 410 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 USP7Q93009 1102 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 ZNF670Q9BS34 389 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 RIBC2Q9H4K1 309 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 CDH9Q9ULB4 789 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 ZC3H13Q5T200 1668 aaKnown RBP13.74□□□□□ -0.21
SF3A1-201ENST00000215793 AGLP35573 1532 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 C1orf232A0A0U1RR37 186 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 BCLAF3A2AJT9 711 aaKnown RBP13.74□□□□□ -0.21
SF3A1-201ENST00000215793 TISP43B9A030 160 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 KPNA4O00629 521 aaPredicted RBP13.74□□□□□ -0.21
SF3A1-201ENST00000215793 MYL12BO14950 172 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 VAV1P15498 845 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 STX4Q12846 297 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 DGUOKQ16854 277 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 PPM1LQ5SGD2 360 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 C16orf46Q6P387 395 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 UNC5AQ6ZN44 842 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 PIWIL4Q7Z3Z4 852 aaKnown RBP13.74□□□□□ -0.21
SF3A1-201ENST00000215793 FUKQ8N0W3 1084 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 AADATQ8N5Z0 425 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 SELENOMQ8WWX9 145 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 CENPIQ92674 756 aaPredicted RBP13.74□□□□□ -0.21
SF3A1-201ENST00000215793 HAS1Q92839 578 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 DNAJC19Q96DA6 116 aa13.74□□□□□ -0.21
SF3A1-201ENST00000215793 SPRTNQ9H040 489 aaPredicted RBP13.74□□□□□ -0.21
SF3A1-201ENST00000215793 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.74□□□□□ -0.218e-10■■■■■ 31.5
SF3A1-201ENST00000215793 UBIAD1Q9Y5Z9 338 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms