RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 PPP2CAP67775 309 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 FMO1Q01740 532 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 CDR2Q01850 454 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 UBXN1Q04323 297 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 CNTN1Q12860 1018 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 ELAVL3Q14576 367 aaKnown RBP10.56□□□□□ -0.72
SCN1A-222ENST00000642141 CT47A1Q5JQC4 288 aaPredicted RBP10.56□□□□□ -0.72
SCN1A-222ENST00000642141 BRMS1LQ5PSV4 323 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 IL27RAQ6UWB1 636 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 LRRC31Q6UY01 552 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 MARCH9Q86YJ5 346 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 GATAD2AQ86YP4 633 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 DRC7Q8IY82 874 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 MSANTD4Q8NCY6 345 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 NEK11Q8NG66 645 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 JOSD2Q8TAC2 188 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 RXFP2Q8WXD0 754 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 OR8D1Q8WZ84 308 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 KLK6Q92876 244 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 SERAC1Q96JX3 654 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 SPAG5Q96R06 1193 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 PSMB7Q99436 277 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 C11orf70Q9BRQ4 267 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 RRN3Q9NYV6 651 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 VPS51Q9UID3 782 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 PCOLCE2Q9UKZ9 415 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 TBC1D30Q9Y2I9 924 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 SIK3Q9Y2K2 1263 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 ACTL7AQ9Y615 435 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 ZZEF1O43149 2961 aa10.56□□□□□ -0.72
SCN1A-222ENST00000642141 WDFY3Q8IZQ1 3526 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 A0A1W2PPC4 97 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 DRGXA6NNA5 263 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 CBX4O00257 560 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 KPNA3O00505 521 aaPredicted RBP10.55□□□□□ -0.72
SCN1A-222ENST00000642141 ATP9BO43861 1147 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 CBFA2T3O75081 653 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 WNT1P04628 370 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 ATXN1LP0C7T5 689 aaKnown RBP10.55□□□□□ -0.72
SCN1A-222ENST00000642141 C7P10643 843 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 SRCP12931 536 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 RDXP35241 583 aaKnown RBP10.55□□□□□ -0.72
SCN1A-222ENST00000642141 STAT1P42224 750 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 GRIA4P48058 902 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 DNA2P51530 1060 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 JAM2P57087 298 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 RACK1P63244 317 aaKnown RBP10.55□□□□□ -0.72
SCN1A-222ENST00000642141 MYL5Q02045 173 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 SFSWAPQ12872 951 aaKnown RBP10.55□□□□□ -0.72
SCN1A-222ENST00000642141 STX1AQ16623 288 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 CCDC14Q49A88 953 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 ARTNQ5T4W7 220 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 RWDD4Q6NW29 188 aaKnown RBP10.55□□□□□ -0.72
SCN1A-222ENST00000642141 LEKR1Q6ZMV7 388 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 RBM43Q6ZSC3 357 aaKnown RBP10.55□□□□□ -0.72
SCN1A-222ENST00000642141 DSG4Q86SJ6 1040 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 SH2D3CQ8N5H7 860 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 AOPEPQ8N6M6 819 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 CHST14Q8NCH0 376 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 PIP4K2CQ8TBX8 421 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 GRIN3AQ8TCU5 1115 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 PGAP3Q96FM1 320 aaPredicted RBP10.55□□□□□ -0.72
SCN1A-222ENST00000642141 PPP1R9BQ96SB3 815 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 MYOCQ99972 504 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 ACE2Q9BYF1 805 aaPredicted RBP10.55□□□□□ -0.72
SCN1A-222ENST00000642141 ANO10Q9NW15 660 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 ADAMTS1Q9UHI8 967 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 ZMIZ1Q9ULJ6 1067 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 PPM1HQ9ULR3 514 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 FZD4Q9ULV1 537 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 CA5BQ9Y2D0 317 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 CFAP47Q6ZTR5 3102 aa10.55□□□□□ -0.72
SCN1A-222ENST00000642141 PCNX2A6NKB5 2137 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 LGALS16A8MUM7 142 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 FAM72CH0Y354 149 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 GOLGA6L22H0YM25 854 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 MCF2LO15068 1137 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 VILLO15195 856 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 CYP1A1P04798 512 aaPredicted RBP10.54□□□□□ -0.72
SCN1A-222ENST00000642141 CTSLP07711 333 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 ATP1A3P13637 1013 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 MMP8P22894 467 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 CD38P28907 300 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 ADRA1BP35368 520 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 ACVRL1P37023 503 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 CTSKP43235 329 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 KRT83P78385 493 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 C5orf22Q49AR2 442 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 ARSIQ5FYB1 569 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 FAM72AQ5TYM5 149 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 FAM72DQ6L9T8 149 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 FAM72BQ86X60 149 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 OR2A12Q8NGT7 310 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 GATA6Q92908 595 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 C1orf74Q96LT6 269 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 C2orf49Q9BVC5 232 aaPredicted RBP10.54□□□□□ -0.72
SCN1A-222ENST00000642141 ADAM22Q9P0K1 906 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 LIMA1Q9UHB6 759 aaKnown RBP10.54□□□□□ -0.72
SCN1A-222ENST00000642141 PAXBP1Q9Y5B6 917 aa10.54□□□□□ -0.72
SCN1A-222ENST00000642141 USP24Q9UPU5 2620 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms