RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 KRT73Q86Y46 540 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 MCFD2Q8NI22 146 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 C7orf43Q8WVR3 580 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 DHX38Q92620 1227 aaKnown RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 TWNKQ96RR1 684 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 RANBP9Q96S59 729 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF416Q9BWM5 594 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 VPS33BQ9H267 617 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 COQ10BQ9H8M1 238 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 SSU72Q9NP77 194 aaKnown RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 TMLHEQ9NVH6 421 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.83□□□□□ -1.481e-7■■■□□ 19.2
SCN1A-216ENST00000637968 DUX4Q9UBX2 424 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 DNMT3LQ9UJW3 386 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ABCG2Q9UNQ0 655 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ALG6Q9Y672 507 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ADCY10Q96PN6 1610 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 MST1RQ04912 1400 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 A0A087X0B3 334 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 PNMA6FA0A0J9YX94 578 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 OR6C70A6NIJ9 312 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF98A6NK75 572 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ATP5J2-PTCD1G3V325 749 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 HLA-DOAP06340 250 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 NR3C2P08235 984 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 UQCRFS1P1P0C7P4 283 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 MYL4P12829 197 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 RAB3AP20336 220 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 PIK3R1P27986 724 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 GRK3P35626 688 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 DGKQP52824 942 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ABATP80404 500 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 BST2Q10589 180 aaKnown RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 MTHFSDQ2M296 383 aaKnown RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 MIIPQ5JXC2 388 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ATAD3CQ5T2N8 411 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 LRRC8EQ6NSJ5 796 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 PDXDC2PQ6P474 469 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 IFNL3Q8IZI9 196 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 STX19Q8N4C7 294 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 TMEM35BQ8NCS4 154 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ACDQ96AP0 544 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 C9orf16Q9BUW7 83 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 TRIM8Q9BZR9 551 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 PCDHGB3Q9Y5G1 929 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 V9GY48 417 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ABCA9Q8IUA7 1624 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 METP08581 1390 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 WRBO00258 174 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 EPHB6O15197 1021 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 DYNC1LI2O43237 492 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 CFBP00751 764 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 RPS17P08708 135 aaKnown RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 RALBP11234 206 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 DDCP20711 480 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 MATN1P21941 496 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 KCNA5P22460 613 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 DNAJB2P25686 324 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 GALK2Q01415 458 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 SLC12A1Q13621 1099 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 MORF4L2Q15014 288 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 CA9Q16790 459 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 FUT11Q495W5 492 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 FAM26DQ5JW98 314 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 FAM180BQ6P0A1 224 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 NOXA1Q86UR1 476 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 SLC44A2Q8IWA5 706 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 TIGD4Q8IY51 512 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 GUF1Q8N442 669 aaKnown RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 FIBCD1Q8N539 461 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 PRELID2Q8N945 189 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 TEKT5Q96M29 485 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ZSWIM1Q9BR11 485 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 RNF26Q9BY78 433 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 YTHDF1Q9BYJ9 559 aaKnown RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 KBTBD4Q9NVX7 518 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 KLQ9UEF7 1012 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 CORINQ9Y5Q5 1042 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF609O15014 1411 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 CPDO75976 1380 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 UTYO14607 1347 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 HUS1O60921 280 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 TDP2O95551 362 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 TP53P04637 393 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 MAOBP27338 520 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ADCY7P51828 1080 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 TXNL4AP83876 142 aaKnown RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 SPATS1Q496A3 300 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 SHQ1Q6PI26 577 aaKnown RBP5.83□□□□□ -1.48
SCN1A-216ENST00000637968 CCDC149Q6ZUS6 474 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 LUZP2Q86TE4 346 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 TMEM151BQ8IW70 566 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 PPM1KQ8N3J5 372 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 LRRC57Q8N9N7 239 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 TCEAL3Q969E4 200 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 TP53INP1Q96A56 240 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 PHOX2BQ99453 314 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 FAM118BQ9BPY3 351 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 MND1Q9BWT6 205 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 POLE3Q9NRF9 147 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms