RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 APBA1Q02410 837 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 CENPCQ03188 943 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 CCDC15Q0P6D6 951 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.92■□□□□ 0.62
CLN3-241ENST00000635861 SETD3Q86TU7 594 aaPredicted RBP18.92■□□□□ 0.62
CLN3-241ENST00000635861 SLC47A2Q86VL8 602 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 SH2D3CQ8N5H7 860 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 TMEM35BQ8NCS4 154 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 SAP25Q8TEE9 199 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 NT5C3BQ969T7 300 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 C2orf49Q9BVC5 232 aaPredicted RBP18.92■□□□□ 0.62
CLN3-241ENST00000635861 NDST4Q9H3R1 872 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 WDCPQ9H6R7 721 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.92■□□□□ 0.62
CLN3-241ENST00000635861 DACH1Q9UI36 760 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 PPM1HQ9ULR3 514 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 FARP1Q9Y4F1 1045 aaPredicted RBP18.92■□□□□ 0.62
CLN3-241ENST00000635861 TRPM6Q9BX84 2022 aa18.92■□□□□ 0.62
CLN3-241ENST00000635861 RNGTTO60942 597 aaKnown RBP18.91■□□□□ 0.62
CLN3-241ENST00000635861 ITGAVP06756 1048 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 VAV1P15498 845 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 ERCC5P28715 1186 aaPredicted RBP18.91■□□□□ 0.62
CLN3-241ENST00000635861 GABRB2P47870 512 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 DLG2Q15700 870 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 ACCSLQ4AC99 568 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 VWA3BQ502W6 1294 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 CLEC17AQ6ZS10 378 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 TMPRSS12Q86WS5 348 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 C1orf74Q96LT6 269 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 PREBQ9HCU5 417 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 ARHGAP20Q9P2F6 1191 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 GPSM3Q9Y4H4 160 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 TDRD6O60522 2096 aaKnown RBP18.91■□□□□ 0.62
CLN3-241ENST00000635861 GOLGA8CPA6NN73 597 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 LDOC1O95751 146 aaPredicted RBP18.91■□□□□ 0.62
CLN3-241ENST00000635861 ZNF18P17022 549 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 EPHA8P29322 1005 aaPredicted RBP18.91■□□□□ 0.62
CLN3-241ENST00000635861 CLCN6P51797 869 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 PPP2CBP62714 309 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 PPP2CAP67775 309 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 IL9RQ01113 521 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 SETMARQ53H47 684 aaPredicted RBP18.91■□□□□ 0.62
CLN3-241ENST00000635861 AGBL4Q5VU57 503 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 NEK5Q6P3R8 708 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 PDCD7Q8N8D1 485 aaKnown RBP18.91■□□□□ 0.62
CLN3-241ENST00000635861 MSANTD4Q8NCY6 345 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 PIP4K2CQ8TBX8 421 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 TUBGCP2Q9BSJ2 902 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 TKTL2Q9H0I9 626 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 MUC3BQ9H195 1237 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 PDCL3Q9H2J4 239 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 PIGVQ9NUD9 493 aa18.91■□□□□ 0.62
CLN3-241ENST00000635861 AJAP1Q9UKB5 411 aaPredicted RBP18.91■□□□□ 0.62
CLN3-241ENST00000635861 RALYQ9UKM9 306 aaKnown RBP18.91■□□□□ 0.62
CLN3-241ENST00000635861 IGSF10Q6WRI0 2623 aa18.9■□□□□ 0.62
CLN3-241ENST00000635861 ENC1O14682 589 aa18.9■□□□□ 0.62
CLN3-241ENST00000635861 LSM8O95777 96 aaKnown RBP18.9■□□□□ 0.62
CLN3-241ENST00000635861 CAMK2BQ13554 666 aa18.9■□□□□ 0.62
CLN3-241ENST00000635861 SHBQ15464 509 aa18.9■□□□□ 0.62
CLN3-241ENST00000635861 SLC25A52Q3SY17 297 aa18.9■□□□□ 0.62
CLN3-241ENST00000635861 CT47A1Q5JQC4 288 aaPredicted RBP18.9■□□□□ 0.62
CLN3-241ENST00000635861 OTUD1Q5VV17 481 aaPredicted RBP18.9■□□□□ 0.62
CLN3-241ENST00000635861 LRRC31Q6UY01 552 aa18.9■□□□□ 0.62
CLN3-241ENST00000635861 ARCQ7LC44 396 aa18.9■□□□□ 0.62
CLN3-241ENST00000635861 DCAF4L2Q8NA75 395 aa18.9■□□□□ 0.62
CLN3-241ENST00000635861 OR52K2Q8NGK3 314 aa18.9■□□□□ 0.62
CLN3-241ENST00000635861 C18orf8Q96DM3 657 aa18.9■□□□□ 0.62
CLN3-241ENST00000635861 SIK2Q9H0K1 926 aa18.9■□□□□ 0.62
CLN3-241ENST00000635861 SCUBE2Q9NQ36 999 aa18.9■□□□□ 0.62
CLN3-241ENST00000635861 SARDHQ9UL12 918 aa18.9■□□□□ 0.62
CLN3-241ENST00000635861 DRGXA6NNA5 263 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 PRAMEF26H0Y7S4 382 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 RTN2O75298 545 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 RHOCP08134 193 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 SRCP12931 536 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 CYP11B1P15538 503 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 HNF1BP35680 557 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 SULT1E1P49888 294 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 IRAK1P51617 712 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 DEUP1Q05D60 604 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 CNTN1Q12860 1018 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 ILKQ13418 452 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 MIIPQ5JXC2 388 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 C6orf118Q5T5N4 469 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 ZNF783Q6ZMS7 281 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 Q6ZVU0 165 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 C14orf80Q86SX3 495 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 GATAD2AQ86YP4 633 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 ZNF683Q8IZ20 524 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 TMIEQ8NEW7 156 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 MDM1Q8TC05 714 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 CNDP2Q96KP4 475 aaKnown RBP18.89■□□□□ 0.61
CLN3-241ENST00000635861 CLSTN2Q9H4D0 955 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 BAHCC1Q9P281 2608 aa18.89■□□□□ 0.61
CLN3-241ENST00000635861 CELSR3Q9NYQ7 3312 aa18.88■□□□□ 0.61
CLN3-241ENST00000635861 IGLV3-10A0A075B6K4 115 aa18.88■□□□□ 0.61
CLN3-241ENST00000635861 CXorf51AA0A1B0GTR3 108 aa18.88■□□□□ 0.61
CLN3-241ENST00000635861 WNT9AO14904 365 aa18.88■□□□□ 0.61
CLN3-241ENST00000635861 RFPL3O75679 317 aa18.88■□□□□ 0.61
CLN3-241ENST00000635861 ADCY5O95622 1261 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms