RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 VPS4AQ9UN37 437 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 TPRKBQ9Y3C4 175 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 C5orf60A6NFR6 353 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 NDUFS2O75306 463 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 MOCS2O96007 188 aaPredicted RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 CDH2P19022 906 aaPredicted RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 MTHFRP42898 656 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 CENPAP49450 140 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 PTPN5P54829 565 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 SYTL3Q4VX76 610 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 FAM131AQ6UXB0 335 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 TRABD2AQ86V40 505 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 TMEM246Q9BRR3 403 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 ING3Q9NXR8 418 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 ZNF112Q9UJU3 913 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 BAIAP2Q9UQB8 552 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 MRPL11Q9Y3B7 192 aaKnown RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 SCO1O75880 301 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 DLG4P78352 724 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 ALDH6A1Q02252 535 aaKnown RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 CSHL1Q14406 222 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 ARCQ7LC44 396 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 FGD2Q7Z6J4 655 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 SGMS1Q86VZ5 419 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 ARMC8Q8IUR7 673 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 C12orf50Q8NA57 414 aaPredicted RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 MOCOSQ96EN8 888 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 TNKS2Q9H2K2 1166 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 KCTD10Q9H3F6 313 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 TRIT1Q9H3H1 467 aaKnown RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 POMKQ9H5K3 350 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 TAS2R1Q9NYW7 299 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 ANAPC2Q9UJX6 822 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 DHRS12A0PJE2 317 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 C5orf58C9J3I9 102 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 H3BMM5 538 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 PGK2P07205 417 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 NAT2P11245 290 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 PSKH1P11801 424 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 LBPP18428 481 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 KPNA2P52292 529 aaKnown RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 IRF2BP2Q7Z5L9 587 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 DENND6AQ8IWF6 608 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 DCP1AQ9NPI6 582 aaPredicted RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 AGPAT3Q9NRZ7 376 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 RAD54BQ9Y620 910 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 RAB19A4D1S5 217 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 CCDC154A6NI56 674 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 PRKD3O94806 890 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 GIT2Q14161 759 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 SIM2Q14190 667 aaPredicted RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 SF3B4Q15427 424 aaKnown RBP eCLIP5.11□□□□□ -1.595e-7■■■■■ 34.4
VPS13D-214ENST00000620676 CYP20A1Q6UW02 462 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 FAM45AQ8TCE6 357 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 CELF6Q96J87 481 aaKnown RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 APOL5Q9BWW9 433 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 FGFBP2Q9BYJ0 223 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 GNPTGQ9UJJ9 305 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 RAB26Q9ULW5 256 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 SMLR1H3BR10 107 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 NOL4O94818 638 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 CD40LGP29965 261 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 PRIM2P49643 509 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 VBP1P61758 197 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 RACK1P63244 317 aaKnown RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 SAMD4BQ5PRF9 694 aaKnown RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 ZNF366Q8N895 744 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 CRISPLD1Q9H336 500 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 CLCA2Q9UQC9 943 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 FAM32AQ9Y421 112 aaKnown RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 CFAP43Q8NDM7 1665 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 SH3PXD2BA1X283 911 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 CD4P01730 458 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 MTHFD1P11586 935 aaKnown RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 NPY2RP49146 381 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 GPC3P51654 580 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 NRG1Q02297 640 aaPredicted RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 DCAF6Q58WW2 860 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 CENPPQ6IPU0 288 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 INTS5Q6P9B9 1019 aaKnown RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 NDUFAF1Q9Y375 327 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 HLA-DRAP01903 254 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 CYP2C9P11712 490 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 PAMP19021 973 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 NTRK3Q16288 839 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 CCNG2Q16589 344 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 HAUS6Q7Z4H7 955 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 CMC1Q7Z7K0 106 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 IZUMO1Q8IYV9 350 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 BOLLQ8N9W6 283 aaKnown RBP5.11□□□□□ -1.59
VPS13D-214ENST00000620676 NDNFQ8TB73 568 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 ORAI2Q96SN7 254 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 NEK6Q9HC98 313 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 PCDHGA4Q9Y5G9 962 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 ATP6AP2A0A1C7CYW4 349 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 TCRBV9S1A1TA0A576 114 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 EFCAB9A8MZ26 197 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 ATP6AP2O75787 350 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 SUPT7LO94864 414 aa5.11□□□□□ -1.59
VPS13D-214ENST00000620676 ATP5BP06576 529 aaKnown RBP5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms