RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 USP10Q14694 798 aaKnown RBP16.04■□□□□ 0.16
CPSF1-213ENST00000620219 STRA8Q7Z7C7 330 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 LINC00523Q86TU6 105 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 IGDCC3Q8IVU1 814 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 MPP5Q8N3R9 675 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 ING5Q8WYH8 240 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 TXLNGYQ9BZA5 131 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 CPQQ9Y646 472 aa16.04■□□□□ 0.16
CPSF1-213ENST00000620219 GSCP56915 257 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-213ENST00000620219 WDR5P61964 334 aaKnown RBP16.03■□□□□ 0.16
CPSF1-213ENST00000620219 PTAR1Q7Z6K3 402 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-213ENST00000620219 MFN1Q8IWA4 741 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 KREMEN2Q8NCW0 462 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 MARCOQ9UEW3 520 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-213ENST00000620219 ZFP37Q9Y6Q3 630 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-213ENST00000620219 MLLT6P55198 1093 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-213ENST00000620219 OVGP1Q12889 678 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 TRIP4Q15650 581 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-213ENST00000620219 ARHGAP15Q53QZ3 475 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 TTC39BQ5VTQ0 682 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-213ENST00000620219 ELMSAN1Q6PJG2 1045 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 RSPO2Q6UXX9 243 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-213ENST00000620219 TAS2R42Q7RTR8 314 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 HERC6Q8IVU3 1022 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 UNC5BQ8IZJ1 945 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 NAT8LQ8N9F0 302 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 MAML1Q92585 1016 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 USP29Q9HBJ7 922 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 WDR6Q9NNW5 1121 aaKnown RBP16.03■□□□□ 0.16
CPSF1-213ENST00000620219 FAM8A1Q9UBU6 413 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 INSL6Q9Y581 213 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 SUN1O94901 812 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 RHOAP61586 193 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 ALFQ53S48 1182 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 NPWQ8N729 165 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.03■□□□□ 0.16
CPSF1-213ENST00000620219 TOP1MTQ969P6 601 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 TOX2Q96NM4 488 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 MTMR10Q9NXD2 777 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 CFAP97Q9P2B7 532 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 SLC17A6Q9P2U8 582 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 G3BP2Q9UN86 482 aaKnown RBP16.03■□□□□ 0.16
CPSF1-213ENST00000620219 TLR6Q9Y2C9 796 aa16.03■□□□□ 0.16
CPSF1-213ENST00000620219 TEX28O15482 410 aa16.02■□□□□ 0.16
CPSF1-213ENST00000620219 RPA3P35244 121 aaPredicted RBP16.02■□□□□ 0.16
CPSF1-213ENST00000620219 NUDCD3Q8IVD9 361 aa16.02■□□□□ 0.16
CPSF1-213ENST00000620219 SPOCK2Q92563 424 aa16.02■□□□□ 0.16
CPSF1-213ENST00000620219 TLCD1Q96CP7 247 aa16.02■□□□□ 0.16
CPSF1-213ENST00000620219 SMG9Q9H0W8 520 aaKnown RBP16.02■□□□□ 0.16
CPSF1-213ENST00000620219 PNPLA8Q9NP80 782 aa16.02■□□□□ 0.16
CPSF1-213ENST00000620219 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.02■□□□□ 0.167e-8■□□□□ 8.9
CPSF1-213ENST00000620219 C5orf60A6NFR6 353 aa16.02■□□□□ 0.16
CPSF1-213ENST00000620219 MFSD5Q6N075 450 aa16.02■□□□□ 0.16
CPSF1-213ENST00000620219 SLC22A17Q8WUG5 538 aa16.02■□□□□ 0.16
CPSF1-213ENST00000620219 CENPIQ92674 756 aaPredicted RBP16.02■□□□□ 0.16
CPSF1-213ENST00000620219 EBNA1BP2Q99848 306 aaKnown RBP16.02■□□□□ 0.16
CPSF1-213ENST00000620219 CIPCQ9C0C6 399 aa16.02■□□□□ 0.16
CPSF1-213ENST00000620219 SENP1Q9P0U3 644 aa16.02■□□□□ 0.16
CPSF1-213ENST00000620219 ACSL4O60488 711 aa16.02■□□□□ 0.15
CPSF1-213ENST00000620219 GJA8P48165 433 aa16.02■□□□□ 0.15
CPSF1-213ENST00000620219 TRMT10BQ6PF06 316 aaKnown RBP16.02■□□□□ 0.15
CPSF1-213ENST00000620219 CCDC149Q6ZUS6 474 aa16.02■□□□□ 0.15
CPSF1-213ENST00000620219 SGF29Q96ES7 293 aa16.02■□□□□ 0.15
CPSF1-213ENST00000620219 ASIC4Q96FT7 647 aa16.02■□□□□ 0.15
CPSF1-213ENST00000620219 TBL1YQ9BQ87 522 aa16.02■□□□□ 0.15
CPSF1-213ENST00000620219 BRD8Q9H0E9 1235 aa16.02■□□□□ 0.15
CPSF1-213ENST00000620219 PABPN1LA6NDY0 278 aaKnown RBP16.02■□□□□ 0.15
CPSF1-213ENST00000620219 PSMD3O43242 534 aa16.02■□□□□ 0.15
CPSF1-213ENST00000620219 SERPINF2P08697 491 aa16.02■□□□□ 0.15
CPSF1-213ENST00000620219 FGFR3P22607 806 aa16.02■□□□□ 0.15
CPSF1-213ENST00000620219 ZNF135P52742 658 aaPredicted RBP16.02■□□□□ 0.15
CPSF1-213ENST00000620219 TAF1BQ53T94 588 aaPredicted RBP16.02■□□□□ 0.15
CPSF1-213ENST00000620219 UNC5AQ6ZN44 842 aa16.02■□□□□ 0.15
CPSF1-213ENST00000620219 VAT1Q99536 393 aa16.02■□□□□ 0.15
CPSF1-213ENST00000620219 CRISPLD1Q9H336 500 aa16.02■□□□□ 0.15
CPSF1-213ENST00000620219 UBA2Q9UBT2 640 aaPredicted RBP16.02■□□□□ 0.15
CPSF1-213ENST00000620219 GCATO75600 419 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 CHRNA4P43681 627 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 GPX6P59796 221 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 DDX53Q86TM3 631 aaKnown RBP16.01■□□□□ 0.15
CPSF1-213ENST00000620219 RTL3Q8N8U3 475 aaKnown RBP16.01■□□□□ 0.15
CPSF1-213ENST00000620219 LPCAT1Q8NF37 534 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 ZNF333Q96JL9 665 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 CHRAC1Q9NRG0 131 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 OSER1Q9NX31 292 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 SLC24A2Q9UI40 661 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 J3KR12 359 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 CCL22O00626 93 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 DGKIO75912 1065 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 C1RP00736 705 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 GLRBP48167 497 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 SPDYCQ5MJ68 293 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 SRLQ86TD4 932 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 RIBC1Q8N443 379 aaPredicted RBP16.01■□□□□ 0.15
CPSF1-213ENST00000620219 PPP4R1Q8TF05 950 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 VPS39Q96JC1 886 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 ELMO2Q96JJ3 720 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 CSNK1G1Q9HCP0 422 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 SCUBE2Q9NQ36 999 aa16.01■□□□□ 0.15
CPSF1-213ENST00000620219 CPSF2Q9P2I0 782 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms