RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ZMPSTE24O75844 475 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 ASLP04424 464 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 DLDP09622 509 aaKnown RBP20.17■□□□□ 0.82
UPF3A-211ENST00000618700 HNRNPLP14866 589 aaKnown RBP eCLIP20.17■□□□□ 0.82
UPF3A-211ENST00000618700 ZFXP17010 805 aaPredicted RBP20.17■□□□□ 0.82
UPF3A-211ENST00000618700 POLR2EP19388 210 aaKnown RBP20.17■□□□□ 0.82
UPF3A-211ENST00000618700 NUMBP49757 651 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 ADCY2Q08462 1091 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 SERINC3Q13530 473 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 EGFLAMQ63HQ2 1017 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 TP53INP2Q8IXH6 220 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 KCNV2Q8TDN2 545 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.17■□□□□ 0.82
UPF3A-211ENST00000618700 SORCS1Q8WY21 1168 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 WDR24Q96S15 920 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 MAK16Q9BXY0 300 aaKnown RBP20.17■□□□□ 0.82
UPF3A-211ENST00000618700 OSBPL8Q9BZF1 889 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 SLC39A8Q9C0K1 460 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 ATP13A1Q9HD20 1204 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 VPS51Q9UID3 782 aa20.17■□□□□ 0.82
UPF3A-211ENST00000618700 NYNRINQ9P2P1 1898 aaKnown RBP20.16■□□□□ 0.82
UPF3A-211ENST00000618700 CXorf51AA0A1B0GTR3 108 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 SNAP91O60641 907 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 ATP5BP06576 529 aaKnown RBP20.16■□□□□ 0.82
UPF3A-211ENST00000618700 GLDCP23378 1020 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 CETN2P41208 172 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 CTSOP43234 321 aaPredicted RBP20.16■□□□□ 0.82
UPF3A-211ENST00000618700 SEC13P55735 322 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 GNG11P61952 73 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 GBE1Q04446 702 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 SULT2A1Q06520 285 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 TFDP2Q14188 446 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 LLGL1Q15334 1064 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 PTPRNQ16849 979 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 KAZNQ674X7 775 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 Q6ZS52 159 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 BBS12Q6ZW61 710 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 BMP8AQ7Z5Y6 402 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 NETO2Q8NC67 525 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 USP33Q8TEY7 942 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 UCMAQ8WVF2 138 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 ACDQ96AP0 544 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 MRGPRX3Q96LB0 322 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 SPON2Q9BUD6 331 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 LMAN1LQ9HAT1 526 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 DTLQ9NZJ0 730 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 THAP10Q9P2Z0 257 aaPredicted RBP20.16■□□□□ 0.82
UPF3A-211ENST00000618700 SIT1Q9Y3P8 196 aa20.16■□□□□ 0.82
UPF3A-211ENST00000618700 ARHGAP42A6NI28 874 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 KCNK3O14649 394 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 NPC1O15118 1278 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 FANCGO15287 622 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 NCAM2O15394 837 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 CST8O60676 142 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 ATP1A1P05023 1023 aaKnown RBP20.15■□□□□ 0.82
UPF3A-211ENST00000618700 AOC1P19801 751 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 RPS9P46781 194 aaKnown RBP20.15■□□□□ 0.82
UPF3A-211ENST00000618700 PAPOLAP51003 745 aaKnown RBP20.15■□□□□ 0.82
UPF3A-211ENST00000618700 DYNLT1P63172 113 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 MRPS21P82921 87 aaKnown RBP20.15■□□□□ 0.82
UPF3A-211ENST00000618700 ECT2LQ008S8 904 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 GALNT2Q10471 571 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 SLC10A2Q12908 348 aaPredicted RBP20.15■□□□□ 0.82
UPF3A-211ENST00000618700 ENPP2Q13822 863 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 EMC10Q5UCC4 262 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 IL31Q6EBC2 164 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 ZNF513Q8N8E2 541 aaPredicted RBP20.15■□□□□ 0.82
UPF3A-211ENST00000618700 CCDC26Q8TAB7 109 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 CYB5D2Q8WUJ1 264 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 MYO19Q96H55 970 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 LRFN3Q9BTN0 628 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 HEMGNQ9BXL5 484 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 DLGAP2Q9P1A6 1054 aa20.15■□□□□ 0.82
UPF3A-211ENST00000618700 NUP205Q92621 2012 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 PRR33A8MZF0 331 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 CBX4O00257 560 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 DFFAO00273 331 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 KDELR3O43731 214 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 TGM2P21980 687 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 ARF5P84085 180 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 KLF1Q13351 362 aaPredicted RBP20.14■□□□□ 0.81
UPF3A-211ENST00000618700 GAS6Q14393 721 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 ZNF234Q14588 700 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 E2F5Q15329 346 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 SEL1L2Q5TEA6 688 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 PKN3Q6P5Z2 889 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 NPNTQ6UXI9 565 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 NYAP1Q6ZVC0 841 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 IL17RCQ8NAC3 791 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 KDM1BQ8NB78 822 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 OLFM3Q96PB7 478 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 CHRDQ9H2X0 955 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 PDFQ9HBH1 243 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 ERVW-1Q9UQF0 538 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 HS3ST2Q9Y278 367 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 RAD54BQ9Y620 910 aa20.14■□□□□ 0.81
UPF3A-211ENST00000618700 ZSCAN5CA6NGD5 496 aaPredicted RBP20.13■□□□□ 0.81
UPF3A-211ENST00000618700 CHURC1-FNTBB4DL54 471 aa20.13■□□□□ 0.81
UPF3A-211ENST00000618700 PI15O43692 258 aa20.13■□□□□ 0.81
UPF3A-211ENST00000618700 PRAMEF11O60813 436 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms