RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 PARVAQ9NVD7 372 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 CNOT8Q9UFF9 292 aaKnown RBP16.41■□□□□ 0.22
BRCA1-228ENST00000618469 OR12D3Q9UGF7 316 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 SLCO3A1Q9UIG8 710 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 DMXL2Q8TDJ6 3036 aa16.41■□□□□ 0.22
BRCA1-228ENST00000618469 CACNA1EQ15878 2313 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 RTN2O75298 545 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 DNTTP04053 509 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 SERPING1P05155 500 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 PLEKP08567 350 aaPredicted RBP16.4■□□□□ 0.22
BRCA1-228ENST00000618469 PSMA2P25787 234 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 CASP14P31944 242 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 NNMTP40261 264 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 RPS14P62263 151 aaKnown RBP16.4■□□□□ 0.22
BRCA1-228ENST00000618469 ZNF33AQ06730 810 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 MAMLD1Q13495 774 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 EFHC2Q5JST6 749 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 SPDYCQ5MJ68 293 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 ARTNQ5T4W7 220 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 MANEALQ5VSG8 457 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 PLEKHA7Q6IQ23 1121 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 RWDD4Q6NW29 188 aaKnown RBP16.4■□□□□ 0.22
BRCA1-228ENST00000618469 SCYL2Q6P3W7 929 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 SETD3Q86TU7 594 aaPredicted RBP16.4■□□□□ 0.22
BRCA1-228ENST00000618469 DRC7Q8IY82 874 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 TRIM11Q96F44 468 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 RSPH9Q9H1X1 276 aaPredicted RBP16.4■□□□□ 0.22
BRCA1-228ENST00000618469 ITM2CQ9NQX7 267 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 PPARGC1AQ9UBK2 798 aaKnown RBP16.4■□□□□ 0.22
BRCA1-228ENST00000618469 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.4■□□□□ 0.22
BRCA1-228ENST00000618469 OR51B4Q9Y5P0 310 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 BZW2Q9Y6E2 419 aaKnown RBP16.4■□□□□ 0.22
BRCA1-228ENST00000618469 ADAMTS20P59510 1910 aa16.4■□□□□ 0.22
BRCA1-228ENST00000618469 NBEAQ8NFP9 2946 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 DSPP15924 2871 aaKnown RBP16.39■□□□□ 0.21
BRCA1-228ENST00000618469 TMEM8BA6NDV4 472 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 MEI4A8MW99 385 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 FAM72CH0Y354 149 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 SNAP91O60641 907 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 LRIG2O94898 1065 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 ZIC2O95409 532 aaPredicted RBP16.39■□□□□ 0.21
BRCA1-228ENST00000618469 IGLV3-19P01714 112 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 VAV1P15498 845 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 CSRP1P21291 193 aaKnown RBP16.39■□□□□ 0.21
BRCA1-228ENST00000618469 ITPKAP23677 461 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 KRT83P78385 493 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 NRG1Q02297 640 aaPredicted RBP16.39■□□□□ 0.21
BRCA1-228ENST00000618469 SCAPQ12770 1279 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 ARID5BQ14865 1188 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 C9orf64Q5T6V5 341 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 FAM72AQ5TYM5 149 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 SPECC1LQ69YQ0 1117 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 FAM72DQ6L9T8 149 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 SLFN11Q7Z7L1 901 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 FAM72BQ86X60 149 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 SLC41A1Q8IVJ1 513 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 DCAF4L2Q8NA75 395 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 OR7D4Q8NG98 312 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 TBC1D31Q96DN5 1066 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 PSMB7Q99436 277 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 C2orf49Q9BVC5 232 aaPredicted RBP16.39■□□□□ 0.21
BRCA1-228ENST00000618469 GPR174Q9BXC1 333 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 MAGEB5Q9BZ81 275 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 OSBPL2Q9H1P3 480 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 WSB2Q9NYS7 404 aaPredicted RBP16.39■□□□□ 0.21
BRCA1-228ENST00000618469 MYO1AQ9UBC5 1043 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 ZNF212Q9UDV6 495 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 ADAMTS1Q9UHI8 967 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 VPS51Q9UID3 782 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 NEU3Q9UQ49 428 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 SCINQ9Y6U3 715 aa16.39■□□□□ 0.21
BRCA1-228ENST00000618469 A0A0D9SEW6 157 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 TARSL2A2RTX5 802 aaKnown RBP16.38■□□□□ 0.21
BRCA1-228ENST00000618469 TAF4O00268 1085 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 RNASEH1O60930 286 aaKnown RBP16.38■□□□□ 0.21
BRCA1-228ENST00000618469 MYBL1P10243 752 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 OXTRP30559 389 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 DPP6P42658 865 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 PSMD8P48556 350 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 ZBTB16Q05516 673 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 TRIM14Q14142 442 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 CST6Q15828 149 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 ACCSLQ4AC99 568 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 SYT12Q8IV01 421 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 MMAAQ8IVH4 418 aaKnown RBP16.38■□□□□ 0.21
BRCA1-228ENST00000618469 PYROXD2Q8N2H3 581 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 STK40Q8N2I9 435 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 PTPRN2Q92932 1015 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 TRIM7Q9C029 511 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 PABPC3Q9H361 631 aaKnown RBP16.38■□□□□ 0.21
BRCA1-228ENST00000618469 TMEM74BQ9NUR3 256 aa16.38■□□□□ 0.21
BRCA1-228ENST00000618469 ANKRD11Q6UB99 2663 aaPredicted RBP16.37■□□□□ 0.21
BRCA1-228ENST00000618469 ILVBLA1L0T0 632 aa16.37■□□□□ 0.21
BRCA1-228ENST00000618469 MID1O15344 667 aa16.37■□□□□ 0.21
BRCA1-228ENST00000618469 RHOQP17081 205 aa16.37■□□□□ 0.21
BRCA1-228ENST00000618469 AIF1P55008 147 aa16.37■□□□□ 0.21
BRCA1-228ENST00000618469 FAM193AP78312 1265 aa16.37■□□□□ 0.21
BRCA1-228ENST00000618469 SIM1P81133 766 aaPredicted RBP16.37■□□□□ 0.21
BRCA1-228ENST00000618469 ELAVL3Q14576 367 aaKnown RBP16.37■□□□□ 0.21
BRCA1-228ENST00000618469 TRIM61Q5EBN2 209 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms