RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SARDHQ9UL12 918 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 TRPM6Q9BX84 2022 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 J3KR12 359 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 MTA2O94776 668 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 GKP32189 559 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 NOP2P46087 812 aaKnown RBP13.81□□□□□ -0.2
LINC00540-202ENST00000616974 PLK1P53350 603 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 CDH6P55285 790 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 DPYSL3Q14195 570 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 EOGTQ5NDL2 527 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 C9orf64Q5T6V5 341 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 LRRC8AQ8IWT6 810 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 TSC1Q92574 1164 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 KRT35Q92764 455 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 ZNF419Q96HQ0 510 aaPredicted RBP13.81□□□□□ -0.2
LINC00540-202ENST00000616974 CSPG4P5Q96PW8 444 aa13.81□□□□□ -0.2
LINC00540-202ENST00000616974 IRX2Q9BZI1 471 aaPredicted RBP13.81□□□□□ -0.2
LINC00540-202ENST00000616974 BCCIPQ9P287 314 aaKnown RBP eCLIP13.81□□□□□ -0.2
LINC00540-202ENST00000616974 MBD1Q9UIS9 605 aaPredicted RBP13.81□□□□□ -0.2
LINC00540-202ENST00000616974 LRRK1Q38SD2 2015 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 ILVBLA1L0T0 632 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 AXIN1O15169 862 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 APBB3O95704 486 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 ADCY2Q08462 1091 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 DLG2Q15700 870 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 B4GALNT4Q76KP1 1039 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 ASCL5Q7RTU5 278 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 SETD3Q86TU7 594 aaPredicted RBP13.8□□□□□ -0.2
LINC00540-202ENST00000616974 TMPRSS6Q8IU80 811 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 STK40Q8N2I9 435 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 PGBD3Q8N328 593 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 SH2D3CQ8N5H7 860 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 CHST14Q8NCH0 376 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 OR6K2Q8NGY2 324 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 EPAS1Q99814 870 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 SLC39A8Q9C0K1 460 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 KCNF1Q9H3M0 494 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 ZSCAN32Q9NX65 697 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 CYP8B1Q9UNU6 501 aa13.8□□□□□ -0.2
LINC00540-202ENST00000616974 ASCC3Q8N3C0 2202 aaKnown RBP13.8□□□□□ -0.2
LINC00540-202ENST00000616974 MACROD2A1Z1Q3 448 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 C3orf70A6NLC5 250 aaPredicted RBP13.79□□□□□ -0.2
LINC00540-202ENST00000616974 RASA4BC9J798 803 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 RASA4O43374 803 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 LILRB5O75023 590 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 ATP5BP06576 529 aaKnown RBP13.79□□□□□ -0.2
LINC00540-202ENST00000616974 CTSLP07711 333 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 SPA17Q15506 151 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 CCDC6Q16204 474 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 HNRNPA1L2Q32P51 320 aaKnown RBP13.79□□□□□ -0.2
LINC00540-202ENST00000616974 ZNF528Q3MIS6 628 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 PREPLQ4J6C6 727 aaPredicted RBP13.79□□□□□ -0.2
LINC00540-202ENST00000616974 C6orf118Q5T5N4 469 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 IL31Q6EBC2 164 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 KIAA1324Q6UXG2 1013 aaKnown RBP13.79□□□□□ -0.2
LINC00540-202ENST00000616974 NUDT18Q6ZVK8 323 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 FAM124AQ86V42 546 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 KBTBD6Q86V97 674 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 CCDC117Q8IWD4 279 aaPredicted RBP13.79□□□□□ -0.2
LINC00540-202ENST00000616974 DCLK2Q8N568 766 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 PCDH19Q8TAB3 1148 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 UCMAQ8WVF2 138 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 FAM129BQ96TA1 746 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 HERPUD2Q9BSE4 406 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 ACE2Q9BYF1 805 aaPredicted RBP13.79□□□□□ -0.2
LINC00540-202ENST00000616974 LRRC19Q9H756 370 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 PACSIN2Q9UNF0 486 aaPredicted RBP13.79□□□□□ -0.2
LINC00540-202ENST00000616974 ALG6Q9Y672 507 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 SLCO1B1Q9Y6L6 691 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 PLXNA2O75051 1894 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 RAMP2O60895 175 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 VAV2P52735 878 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 CAMK2GQ13555 558 aaPredicted RBP13.79□□□□□ -0.2
LINC00540-202ENST00000616974 POLD3Q15054 466 aaPredicted RBP13.79□□□□□ -0.2
LINC00540-202ENST00000616974 ACCSLQ4AC99 568 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 AADACL2Q6P093 401 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 LONP2Q86WA8 852 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 RHOT2Q8IXI1 618 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 DCAF4L2Q8NA75 395 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 ATP11CQ8NB49 1132 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 SUMF1Q8NBK3 374 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 TPCN2Q8NHX9 752 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 EXOC2Q96KP1 924 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 NSMCE3Q96MG7 304 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 IER2Q9BTL4 223 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 CALN1Q9BXU9 219 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 TM6SF2Q9BZW4 377 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 INTUQ9ULD6 942 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 ADGRG1Q9Y653 693 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 CAPN6Q9Y6Q1 641 aa13.79□□□□□ -0.2
LINC00540-202ENST00000616974 TP53BP1Q12888 1972 aaPredicted RBP13.79□□□□□ -0.2
LINC00540-202ENST00000616974 TTC24A2A3L6 582 aaPredicted RBP13.78□□□□□ -0.2
LINC00540-202ENST00000616974 MOCS3O95396 460 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 NBL1P41271 181 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 NUBP1P53384 320 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 AIF1P55008 147 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 ACAP1Q15027 740 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 MAP7D1Q3KQU3 841 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 BOLA3Q53S33 107 aa13.78□□□□□ -0.2
LINC00540-202ENST00000616974 PRR23BQ6ZRT6 265 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms