RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 YDJCA8MPS7 323 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 RFX3P48380 749 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 STARD3Q14849 445 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 CCDC92Q53HC0 331 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-212ENST00000616140 ARHGAP15Q53QZ3 475 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 MILR1Q7Z6M3 343 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 ACMSDQ8TDX5 336 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 TRPC4APQ8TEL6 797 aa14.23□□□□□ -0.13
CPSF1-212ENST00000616140 MTG1Q9BT17 334 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-212ENST00000616140 POLR1EQ9GZS1 481 aaKnown RBP14.23□□□□□ -0.13
CPSF1-212ENST00000616140 SEMA4BQ9NPR2 832 aaPredicted RBP14.23□□□□□ -0.13
CPSF1-212ENST00000616140 HOXB8P17481 243 aaPredicted RBP14.22□□□□□ -0.13
CPSF1-212ENST00000616140 EPHA3P29320 983 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 ATN1P54259 1190 aaPredicted RBP14.22□□□□□ -0.13
CPSF1-212ENST00000616140 WASHC5Q12768 1159 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 TP53BP2Q13625 1128 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 TTC7BQ86TV6 843 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 TMEM86AQ8N2M4 240 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 CAPN10Q9HC96 672 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 STARD7Q9NQZ5 370 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 C2CD2Q9Y426 696 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 C1orf232A0A0U1RR37 186 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 ATP6AP2A0A1C7CYW4 349 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 CNOT3O75175 753 aaKnown RBP14.22□□□□□ -0.13
CPSF1-212ENST00000616140 NPM3O75607 178 aaKnown RBP14.22□□□□□ -0.13
CPSF1-212ENST00000616140 ATP6AP2O75787 350 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 BCL10O95999 233 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 GRIA4P48058 902 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 UBAP2LQ14157 1087 aaKnown RBP14.22□□□□□ -0.13
CPSF1-212ENST00000616140 CMC1Q7Z7K0 106 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 SEPT8Q92599 483 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 SMAD5Q99717 465 aaKnown RBP14.22□□□□□ -0.13
CPSF1-212ENST00000616140 ADAM2Q99965 735 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 HGH1Q9BTY7 390 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 GRIP2Q9C0E4 1043 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 SLC7A5P2Q9GIP4 190 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 EPS8L2Q9H6S3 715 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 KANSL3Q9P2N6 904 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 TCHHQ07283 1943 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 KPNA6O60684 536 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 GSTM1P09488 218 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 ATP5F1P24539 256 aaPredicted RBP14.22□□□□□ -0.13
CPSF1-212ENST00000616140 RRM2P31350 389 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 ALDH6A1Q02252 535 aaKnown RBP14.22□□□□□ -0.13
CPSF1-212ENST00000616140 SLC41A1Q8IVJ1 513 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 HELQQ8TDG4 1101 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 TBCDQ9BTW9 1192 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 KRT84Q9NSB2 600 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 SLC25A13Q9UJS0 675 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 ITM2BQ9Y287 266 aa14.22□□□□□ -0.13
CPSF1-212ENST00000616140 AGPSO00116 658 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 SNUPNO95149 360 aaKnown RBP14.21□□□□□ -0.13
CPSF1-212ENST00000616140 PCNAP12004 261 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 TFEBP19484 476 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 BFSP2Q13515 415 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 IQSEC1Q6DN90 963 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 PIWIL4Q7Z3Z4 852 aaKnown RBP14.21□□□□□ -0.13
CPSF1-212ENST00000616140 ALYREFQ86V81 257 aaKnown RBP14.21□□□□□ -0.13
CPSF1-212ENST00000616140 ZDHHC13Q8IUH4 622 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 KCTD4Q8WVF5 259 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 MBOAT7Q96N66 472 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 CPXM1Q96SM3 734 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 SENP6Q9GZR1 1112 aaPredicted RBP14.21□□□□□ -0.13
CPSF1-212ENST00000616140 UBA2Q9UBT2 640 aaPredicted RBP14.21□□□□□ -0.13
CPSF1-212ENST00000616140 PCDHA11Q9Y5I1 949 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 EFCAB14O75071 495 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 COX4I1P13073 169 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 AKR1A1P14550 325 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 CCNB1P14635 433 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 TSPAN8P19075 237 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 MAPK10P53779 464 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 FSCN1Q16658 493 aaKnown RBP14.21□□□□□ -0.13
CPSF1-212ENST00000616140 CRY2Q49AN0 593 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 PPP1R26Q5T8A7 1209 aaPredicted RBP14.21□□□□□ -0.13
CPSF1-212ENST00000616140 MFSD5Q6N075 450 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 TTC27Q6P3X3 843 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 DLG3Q92796 817 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 TADA1Q96BN2 335 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 ZFRQ96KR1 1074 aaKnown RBP14.21□□□□□ -0.13
CPSF1-212ENST00000616140 YIPF2Q9BWQ6 316 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 CYLDQ9NQC7 956 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 ABCC13Q9NSE7 274 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 COPG2Q9UBF2 871 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 C15orf38-AP3S2A0A0A6YYH1 394 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 FOXO6A8MYZ6 492 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 PEX11AO75192 247 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 PGM3O95394 542 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 LTA4HP09960 611 aaKnown RBP14.21□□□□□ -0.13
CPSF1-212ENST00000616140 LBPP18428 481 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 GRIA3P42263 894 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 HIRAP54198 1017 aaPredicted RBP14.21□□□□□ -0.13
CPSF1-212ENST00000616140 CTBP1Q13363 440 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 ARPINQ7Z6K5 226 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 SYTL1Q8IYJ3 562 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 NDNQ99608 321 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 C9orf16Q9BUW7 83 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 B3GNT5Q9BYG0 378 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 MPP6Q9NZW5 540 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 FBXO5Q9UKT4 447 aa14.21□□□□□ -0.13
CPSF1-212ENST00000616140 LYPLA1O75608 230 aaPredicted RBP14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms