RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 K7ERQ8 282 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 RPP40O75818 363 aaKnown RBP19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 ALDH1A2O94788 518 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 DESP17661 470 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 MAGEA1P43355 309 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 HCAR3P49019 387 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 ATP13A4Q4VNC1 1196 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 BOLA3Q53S33 107 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 RFX8Q6ZV50 586 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 POLNQ7Z5Q5 900 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 RHOT2Q8IXI1 618 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 UMODL1-AS1Q8N2C9 162 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 FAM160A2Q8N612 972 aaPredicted RBP19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 OR2T3Q8NH03 318 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 ZC3H10Q96K80 434 aaKnown RBP19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 FAM129BQ96TA1 746 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 DUSP15Q9H1R2 295 aaPredicted RBP19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 RSPH9Q9H1X1 276 aaPredicted RBP19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 PCDH18Q9HCL0 1135 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 SMG5Q9UPR3 1016 aaKnown RBP19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 INVSQ9Y283 1065 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 MFHAS1Q9Y4C4 1052 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 DCHS1Q96JQ0 3298 aa19.97■□□□□ 0.79
SHKBP1-221ENST00000599833 FGF10O15520 208 aaPredicted RBP19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 SMAD6O43541 496 aaKnown RBP19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 IGLV3-19P01714 112 aa19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 CD48P09326 243 aa19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 TPI1P60174 286 aa19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 STARD3Q14849 445 aa19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 KBTBD6Q86V97 674 aa19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 TMPRSS6Q8IU80 811 aa19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 ARHGAP12Q8IWW6 846 aa19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 NPWQ8N729 165 aa19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 FAM122AQ96E09 287 aa19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 BAG1Q99933 345 aaPredicted RBP19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 MAGEH1Q9H213 219 aa19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 ZWILCHQ9H900 591 aa19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 ETNK2Q9NVF9 386 aa19.96■□□□□ 0.79
SHKBP1-221ENST00000599833 IGHV1OR15-9A0A0B4J2B8 117 aa19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 CXorf51AA0A1B0GTR3 108 aa19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 TARSL2A2RTX5 802 aaKnown RBP19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 C10orf142B7Z368 130 aa19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 RNF103O00237 685 aa19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 ERCC2P18074 760 aa19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 CYLC1P35663 651 aaPredicted RBP19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 ST8SIA6P61647 398 aa19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 RPS14P62263 151 aaKnown RBP19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 PLK5Q496M5 336 aa19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 LINGO4Q6UY18 593 aa19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 ACRBPQ8NEB7 543 aa19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 NKD2Q969F2 451 aaPredicted RBP19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 CSPG4P5Q96PW8 444 aa19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 C2orf49Q9BVC5 232 aaPredicted RBP19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 PRDM16Q9HAZ2 1276 aa19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 ATP13A1Q9HD20 1204 aa19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 ITM2CQ9NQX7 267 aa19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 SUN2Q9UH99 717 aa19.95■□□□□ 0.78
SHKBP1-221ENST00000599833 A0A0A6YYK5 440 aaPredicted RBP19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 A0A0U1RQJ8 604 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 EDDM13A0A1B0GTR0 161 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 EEF2KO00418 725 aaKnown RBP19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 SYNCRIPO60506 623 aaKnown RBP19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 RAMP2O60895 175 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 LMNAP02545 664 aaKnown RBP19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 ARHGAP25P42331 645 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 SIM2Q14190 667 aaPredicted RBP19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 MESDQ14696 234 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 DLG2Q15700 870 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 PPP6R3Q5H9R7 873 aaPredicted RBP19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 TP53INP2Q8IXH6 220 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 HSPH1Q92598 858 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 HMCESQ96FZ2 354 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 PPP1R9BQ96SB3 815 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 LACRTQ9GZZ8 138 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 CATSPERBQ9H7T0 1116 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 FBRSQ9HAH7 460 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 BCCIPQ9P287 314 aaKnown RBP eCLIP19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 LCMT1Q9UIC8 334 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 GON4LQ3T8J9 2241 aa19.94■□□□□ 0.78
SHKBP1-221ENST00000599833 PJA2O43164 708 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 KDELR3O43731 214 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 SERPINH1P50454 418 aaKnown RBP19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 ZNF135P52742 658 aaPredicted RBP19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 METAP1P53582 386 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 KRT83P78385 493 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 SERINC3Q13530 473 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 DPYSL3Q14195 570 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 LPAL2Q16609 132 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 USP39Q53GS9 565 aaKnown RBP19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 STK40Q8N2I9 435 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 NETO2Q8NC67 525 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 FAM131CQ96AQ9 280 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 FAF2Q96CS3 445 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 SPON2Q9BUD6 331 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 SLC39A8Q9C0K1 460 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 GRPEL1Q9HAV7 217 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 PDFQ9HBH1 243 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 SLC25A13Q9UJS0 675 aa19.93■□□□□ 0.78
SHKBP1-221ENST00000599833 DUSP10Q9Y6W6 482 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms