RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ATP9BO43861 1147 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 ZNF821O75541 412 aaPredicted RBP14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 BCKDHBP21953 392 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 COMTP21964 271 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 NOP2P46087 812 aaKnown RBP14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 VASPP50552 380 aaPredicted RBP14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 GSDMDP57764 484 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 SULT2A1Q06520 285 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 POLD3Q15054 466 aaPredicted RBP14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 DLG2Q15700 870 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 MAP7D1Q3KQU3 841 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 AFMIDQ63HM1 303 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 TMPRSS6Q8IU80 811 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 LRRC8AQ8IWT6 810 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 SH2D3CQ8N5H7 860 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 SUMF1Q8NBK3 374 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 SLC39A8Q9C0K1 460 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 MAGEH1Q9H213 219 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 RETREG1Q9H6L5 497 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 ATP13A1Q9HD20 1204 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 MBD1Q9UIS9 605 aaPredicted RBP14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 ALG6Q9Y672 507 aa14.54□□□□□ -0.08
SHKBP1-217ENST00000598558 A0A0A6YYK5 440 aaPredicted RBP14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 C3orf70A6NLC5 250 aaPredicted RBP14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 PROB1E7EW31 1015 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 FGF10O15520 208 aaPredicted RBP14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 SYNCRIPO60506 623 aaKnown RBP14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 RAMP2O60895 175 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 C7P10643 843 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 HTR7P34969 479 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 P2RY2P41231 377 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 VAV2P52735 878 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 CDH6P55285 790 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 ST8SIA6P61647 398 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 RPS14P62263 151 aaKnown RBP14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 KRT83P78385 493 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 CCZ1BP86790 482 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 CCZ1P86791 482 aaPredicted RBP14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 DPYSL3Q14195 570 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 LPAL2Q16609 132 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 HADHQ16836 314 aaKnown RBP14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 IL31Q6EBC2 164 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 ARHGAP36Q6ZRI8 547 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 CACUL1Q86Y37 369 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 STK40Q8N2I9 435 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 PGBD3Q8N328 593 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 OR2T3Q8NH03 318 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 TPCN2Q8NHX9 752 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 PCDH19Q8TAB3 1148 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 VOPP1Q96AW1 172 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 C2orf49Q9BVC5 232 aaPredicted RBP14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 IRF2BPLQ9H1B7 796 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 CATSPERBQ9H7T0 1116 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 BCCIPQ9P287 314 aaKnown RBP eCLIP14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 SUN2Q9UH99 717 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 HS3ST2Q9Y278 367 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 ADGRG1Q9Y653 693 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 DMDP11532 3685 aa14.53□□□□□ -0.08
SHKBP1-217ENST00000598558 H3BRJ5 948 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 J3KR12 359 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 DAPK3O43293 454 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 KDELR3O43731 214 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 ALDH1A2O94788 518 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 PAPOLAP51003 745 aaKnown RBP14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 METAP1P53582 386 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 SERINC3Q13530 473 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 STARD3Q14849 445 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 KIAA1324Q6UXG2 1013 aaKnown RBP14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 Q6ZVU0 165 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 ASCL5Q7RTU5 278 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 KBTBD6Q86V97 674 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 ATP11CQ8NB49 1132 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 GAB3Q8WWW8 586 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 PPP1R9BQ96SB3 815 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 TNKS2Q9H2K2 1166 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 PRDM16Q9HAZ2 1276 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 SLC25A13Q9UJS0 675 aa14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 FCF1Q9Y324 198 aaKnown RBP14.52□□□□□ -0.09
SHKBP1-217ENST00000598558 EDDM13A0A1B0GTR0 161 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 TARSL2A2RTX5 802 aaKnown RBP14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 BTNL10A8MVZ5 291 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 RPP40O75818 363 aaKnown RBP14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 TNNT1P13805 278 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 KDELR1P24390 212 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 MARCKSL1P49006 195 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 YBEYP58557 167 aaPredicted RBP14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 E2F5Q15329 346 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 ACCSLQ4AC99 568 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 PQLC3Q8N755 202 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 KCTD6Q8NC69 237 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 CHST14Q8NCH0 376 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 OR2A12Q8NGT7 310 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 SIPA1Q96FS4 1042 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 DUSP15Q9H1R2 295 aaPredicted RBP14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 RSPH9Q9H1X1 276 aaPredicted RBP14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 EPC1Q9H2F5 836 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 PDFQ9HBH1 243 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 ITM2CQ9NQX7 267 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 LCMT1Q9UIC8 334 aa14.51□□□□□ -0.09
SHKBP1-217ENST00000598558 SARDHQ9UL12 918 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms