RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 GNA12Q03113 381 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 SLC18A3Q16572 532 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 LYSMD4Q5XG99 296 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 USP30Q70CQ3 517 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 CACUL1Q86Y37 369 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 PSTKQ8IV42 348 aaKnown RBP16.53■□□□□ 0.24
TRIM28-213ENST00000598355 RTL3Q8N8U3 475 aaKnown RBP16.53■□□□□ 0.24
TRIM28-213ENST00000598355 CADM4Q8NFZ8 388 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 OR7D4Q8NG98 312 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 TOE1Q96GM8 510 aaKnown RBP16.53■□□□□ 0.24
TRIM28-213ENST00000598355 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.53■□□□□ 0.24
TRIM28-213ENST00000598355 SNRNP25Q9BV90 132 aaKnown RBP16.53■□□□□ 0.24
TRIM28-213ENST00000598355 PABPC3Q9H361 631 aaKnown RBP16.53■□□□□ 0.24
TRIM28-213ENST00000598355 NOL6Q9H6R4 1146 aaKnown RBP16.53■□□□□ 0.24
TRIM28-213ENST00000598355 EVLQ9UI08 416 aaPredicted RBP16.53■□□□□ 0.24
TRIM28-213ENST00000598355 PILRBQ9UKJ0 227 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 USP18Q9UMW8 372 aa16.53■□□□□ 0.24
TRIM28-213ENST00000598355 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.53■□□□□ 0.24
TRIM28-213ENST00000598355 ALOX15BO15296 676 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 MT-CO1P00395 513 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 ACADMP11310 421 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 MIPP30301 263 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 PCK1P35558 622 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 ETFBP38117 255 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 NNMTP40261 264 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 DHPSP49366 369 aaPredicted RBP16.52■□□□□ 0.24
TRIM28-213ENST00000598355 NUMBP49757 651 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 ARF5P84085 180 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 ZNF33AQ06730 810 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 CST6Q15828 149 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 TTC31Q49AM3 519 aaPredicted RBP16.52■□□□□ 0.24
TRIM28-213ENST00000598355 SCYL2Q6P3W7 929 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 SYT12Q8IV01 421 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 ARHGEF2Q92974 986 aaKnown RBP16.52■□□□□ 0.24
TRIM28-213ENST00000598355 ARHGEF26Q96DR7 871 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 HSPA12BQ96MM6 686 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 EPAS1Q99814 870 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 NCAPGQ9BPX3 1015 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 RBSNQ9H1K0 784 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 MAGEH1Q9H213 219 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 DLL3Q9NYJ7 618 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 AP4E1Q9UPM8 1137 aa16.52■□□□□ 0.24
TRIM28-213ENST00000598355 DOCK9Q9BZ29 2069 aa16.52■□□□□ 0.23
TRIM28-213ENST00000598355 ASCC3Q8N3C0 2202 aaKnown RBP16.51■□□□□ 0.23
TRIM28-213ENST00000598355 PRR5-ARHGAP8B1AHC4 643 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 MAP3K13O43283 966 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 RNF8O76064 485 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 CD160O95971 181 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 DNTTP04053 509 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 GLDCP23378 1020 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 LIMK1P53667 647 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 GALCP54803 685 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 ARHGAP8P85298 464 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 GFPT1Q06210 699 aaPredicted RBP16.51■□□□□ 0.23
TRIM28-213ENST00000598355 SF3A2Q15428 464 aaKnown RBP16.51■□□□□ 0.23
TRIM28-213ENST00000598355 DLG2Q15700 870 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 CCDC6Q16204 474 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 CCDC122Q5T0U0 273 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 RWDD4Q6NW29 188 aaKnown RBP16.51■□□□□ 0.23
TRIM28-213ENST00000598355 C22orf39Q6P5X5 142 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 Q6ZVU0 165 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 GAS2L3Q86XJ1 694 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 CNGA4Q8IV77 575 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 STK40Q8N2I9 435 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 DNASE2BQ8WZ79 361 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 FOXJ1Q92949 421 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 SMOC1Q9H4F8 434 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 ATP13A1Q9HD20 1204 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 TMEM74BQ9NUR3 256 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 MYO1AQ9UBC5 1043 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 SERGEFQ9UGK8 458 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 FZD4Q9ULV1 537 aa16.51■□□□□ 0.23
TRIM28-213ENST00000598355 CNOT1A5YKK6 2376 aaKnown RBP16.51■□□□□ 0.23
TRIM28-213ENST00000598355 MCF2LO15068 1137 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 MID1O15344 667 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 FGF10O15520 208 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-213ENST00000598355 ZNF821O75541 412 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-213ENST00000598355 ADH1BP00325 375 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 TPM1P09493 284 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 ITPKAP23677 461 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 EPHB2P29323 1055 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 ACSL1P33121 698 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 DRD3P35462 400 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 ACVRL1P37023 503 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 SERPINH1P50454 418 aaKnown RBP16.5■□□□□ 0.23
TRIM28-213ENST00000598355 ZNF135P52742 658 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-213ENST00000598355 SLC20A2Q08357 652 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 PIGHQ14442 188 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-213ENST00000598355 CA9Q16790 459 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 ERMARDQ5T6L9 678 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 ARMCX6Q7L4S7 300 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 UMODL1-AS1Q8N2C9 162 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 RMDN1Q96DB5 314 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 CHP1Q99653 195 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 NUP85Q9BW27 656 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 GPR174Q9BXC1 333 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 CEP44Q9C0F1 390 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 GPATCH2LQ9NWQ4 482 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 ANKRD36A6QL64 1941 aa16.5■□□□□ 0.23
TRIM28-213ENST00000598355 LNP1A1A4G5 178 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms