RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 CREBRFQ8IUR6 639 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 TMIEQ8NEW7 156 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 NDST4Q9H3R1 872 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 SIX2Q9NPC8 291 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.98□□□□□ -0.17
TRIM28-211ENST00000597968 VANGL2Q9ULK5 521 aa13.98□□□□□ -0.17
TRIM28-211ENST00000597968 IGLV3-10A0A075B6K4 115 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 DRGXA6NNA5 263 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 FOXN3O00409 490 aaPredicted RBP13.97□□□□□ -0.17
TRIM28-211ENST00000597968 ENC1O14682 589 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 RIOK3O14730 519 aaKnown RBP13.97□□□□□ -0.17
TRIM28-211ENST00000597968 RFPL3O75679 317 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 PRNPP04156 253 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 ERBB2P04626 1255 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 ZNF18P17022 549 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 SLC20A2Q08357 652 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 NME3Q13232 169 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 SLC25A52Q3SY17 297 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 ACCSLQ4AC99 568 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 PTPN20Q4JDL3 420 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 VWA3BQ502W6 1294 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 AGBL4Q5VU57 503 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 SFMBT2Q5VUG0 894 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 LAYNQ6UX15 382 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 SLC47A2Q86VL8 602 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 DCAF4L2Q8NA75 395 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 PIP4K2CQ8TBX8 421 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 C18orf8Q96DM3 657 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 CNDP2Q96KP4 475 aaKnown RBP13.97□□□□□ -0.17
TRIM28-211ENST00000597968 HAPLN3Q96S86 360 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 TKTL2Q9H0I9 626 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 MUC3BQ9H195 1237 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 DAAM1Q9Y4D1 1078 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 DSPP15924 2871 aaKnown RBP13.97□□□□□ -0.17
TRIM28-211ENST00000597968 NUMA1Q14980 2115 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 PKD1L2Q7Z442 2459 aa13.97□□□□□ -0.17
TRIM28-211ENST00000597968 SYNJ2BP-COX16A0A087WUM0 186 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 KCNK3O14649 394 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 GRAP2O75791 330 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 SRCP12931 536 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 CYP11B1P15538 503 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 SHBQ15464 509 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 CIR1Q86X95 450 aaPredicted RBP13.96□□□□□ -0.17
TRIM28-211ENST00000597968 ZNF677Q86XU0 584 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 PASD1Q8IV76 773 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 TSC1Q92574 1164 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 IFT43Q96FT9 208 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 PPP1R16AQ96I34 528 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 TUBGCP2Q9BSJ2 902 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 PDCL3Q9H2J4 239 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 PIGVQ9NUD9 493 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 CHMP5Q9NZZ3 219 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 COX16Q9P0S2 106 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 SARDHQ9UL12 918 aa13.96□□□□□ -0.17
TRIM28-211ENST00000597968 A0A087WV48 116 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 ILVBLA1L0T0 632 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 TRABD2BA6NFA1 517 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 RHOCP08134 193 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 VAV1P15498 845 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 ETFBP38117 255 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 PPP2CBP62714 309 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 PPP2CAP67775 309 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 APBA1Q02410 837 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 CENPCQ03188 943 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 DEUP1Q05D60 604 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 CNTN1Q12860 1018 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 RETSATQ6NUM9 610 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 Q6ZVU0 165 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 BNIPLQ7Z465 357 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 ERICH1Q86X53 443 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 DCP2Q8IU60 420 aaKnown RBP13.95□□□□□ -0.18
TRIM28-211ENST00000597968 PLPP6Q8IY26 295 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 ZNF683Q8IZ20 524 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 ATP11CQ8NB49 1132 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 TMEM145Q8NBT3 493 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 MDM1Q8TC05 714 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 RFFLQ8WZ73 363 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 NXPE2Q96DL1 559 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 HDAC8Q9BY41 377 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 CEP44Q9C0F1 390 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 SIK2Q9H0K1 926 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 DYRK4Q9NR20 520 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 PPARGC1AQ9UBK2 798 aaKnown RBP13.95□□□□□ -0.18
TRIM28-211ENST00000597968 CELSR3Q9NYQ7 3312 aa13.95□□□□□ -0.18
TRIM28-211ENST00000597968 PTPRBP23467 1997 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 PLXNB3Q9ULL4 1909 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 CABIN1Q9Y6J0 2220 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 GOLGA8CPA6NN73 597 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 RTN2O75298 545 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 ENDOD1O94919 500 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 ADCY5O95622 1261 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 CKMT2P17540 419 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 EEF1GP26641 437 aaKnown RBP13.94□□□□□ -0.18
TRIM28-211ENST00000597968 CHRNA3P32297 505 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 RECQLP46063 649 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-211ENST00000597968 ACADVLP49748 655 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 SULT1E1P49888 294 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 IL9RQ01113 521 aa13.94□□□□□ -0.18
TRIM28-211ENST00000597968 DRAP1Q14919 205 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-211ENST00000597968 HS1BP3Q53T59 392 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms