RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 PPP2CAP67775 309 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 DLG2Q15700 870 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 KCNT1Q5JUK3 1230 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 CAVIN1Q6NZI2 390 aaKnown RBP13.39□□□□□ -0.27
LIG1-212ENST00000596549 SETD3Q86TU7 594 aaPredicted RBP13.39□□□□□ -0.27
LIG1-212ENST00000596549 PHF13Q86YI8 300 aaPredicted RBP13.39□□□□□ -0.27
LIG1-212ENST00000596549 NAXDQ8IW45 347 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 OR7D4Q8NG98 312 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 GANCQ8TET4 914 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 C1orf74Q96LT6 269 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 SLC6A18Q96N87 628 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 HAPLN3Q96S86 360 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 BPIFA3Q9BQP9 254 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 SYT11Q9BT88 431 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 MAGEB5Q9BZ81 275 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 MUC3BQ9H195 1237 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 SLC32A1Q9H598 525 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 GAREM1Q9H706 876 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 NCKAP1Q9Y2A7 1128 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 PAXBP1Q9Y5B6 917 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 PCNX2A6NKB5 2137 aa13.39□□□□□ -0.27
LIG1-212ENST00000596549 A0A1W2PPC4 97 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 K7ERQ8 282 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 SMAD6O43541 496 aaKnown RBP13.38□□□□□ -0.27
LIG1-212ENST00000596549 CDK11BP21127 795 aaKnown RBP13.38□□□□□ -0.27
LIG1-212ENST00000596549 PTPN9P43378 593 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 NSFP46459 744 aaKnown RBP13.38□□□□□ -0.27
LIG1-212ENST00000596549 SLC14A1Q13336 389 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 KIF19Q2TAC6 998 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 HLA-BQ31612 363 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 AGBL4Q5VU57 503 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 LINGO4Q6UY18 593 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 CCDC185Q8N715 623 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 OR2T34Q8NGX1 318 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 OR8D1Q8WZ84 308 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 BAP1Q92560 729 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 OMDQ99983 421 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 TMEM121BQ9BXQ6 578 aaPredicted RBP13.38□□□□□ -0.27
LIG1-212ENST00000596549 NDFIP2Q9NV92 336 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 SNX11Q9Y5W9 270 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 ANKRD36A6QL64 1941 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 PLXNB3Q9ULL4 1909 aa13.38□□□□□ -0.27
LIG1-212ENST00000596549 FRYQ5TBA9 3013 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 MAP1BP46821 2468 aaKnown RBP13.37□□□□□ -0.27
LIG1-212ENST00000596549 ASPMQ8IZT6 3477 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 FAM72CH0Y354 149 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 WNT9AO14904 365 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 ALOX15BO15296 676 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 CCP110O43303 1012 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 SRGAP2O75044 1071 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 CBFA2T3O75081 653 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 ZMPSTE24O75844 475 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 CER1O95813 267 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 WNT1P04628 370 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 ZNF883P0CG24 379 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 GOT1P17174 413 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 RRM1P23921 792 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 OR1E1P30953 314 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 SDC4P31431 198 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 RFC1P35251 1148 aaPredicted RBP13.37□□□□□ -0.27
LIG1-212ENST00000596549 SIM1P81133 766 aaPredicted RBP13.37□□□□□ -0.27
LIG1-212ENST00000596549 ARF5P84085 180 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 NRG1Q02297 640 aaPredicted RBP13.37□□□□□ -0.27
LIG1-212ENST00000596549 POM121L1PQ3SYA9 428 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 ACCSLQ4AC99 568 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 C6orf118Q5T5N4 469 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 FAM72AQ5TYM5 149 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 E4F1Q66K89 784 aaPredicted RBP13.37□□□□□ -0.27
LIG1-212ENST00000596549 FAM72DQ6L9T8 149 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 C22orf39Q6P5X5 142 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 LRRC31Q6UY01 552 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 STRADAQ7RTN6 431 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 FAM72BQ86X60 149 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 C3orf20Q8ND61 904 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 OR2A12Q8NGT7 310 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 BAHD1Q8TBE0 780 aaPredicted RBP13.37□□□□□ -0.27
LIG1-212ENST00000596549 PIP4K2CQ8TBX8 421 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 FAM172AQ8WUF8 416 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 CENPIQ92674 756 aaPredicted RBP13.37□□□□□ -0.27
LIG1-212ENST00000596549 PPP1R9BQ96SB3 815 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 AGPAT1Q99943 283 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 C2orf49Q9BVC5 232 aaPredicted RBP13.37□□□□□ -0.27
LIG1-212ENST00000596549 ZYG11BQ9C0D3 744 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 RTN4Q9NQC3 1192 aaKnown RBP13.37□□□□□ -0.27
LIG1-212ENST00000596549 TM7SF3Q9NS93 570 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 ADAM22Q9P0K1 906 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 PPARGC1AQ9UBK2 798 aaKnown RBP13.37□□□□□ -0.27
LIG1-212ENST00000596549 PPM1HQ9ULR3 514 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 ANKRD6Q9Y2G4 727 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 ACTL7AQ9Y615 435 aa13.37□□□□□ -0.27
LIG1-212ENST00000596549 LRRK1Q38SD2 2015 aa13.36□□□□□ -0.27
LIG1-212ENST00000596549 LRRC72A6NJI9 287 aa13.36□□□□□ -0.27
LIG1-212ENST00000596549 MCF2LO15068 1137 aa13.36□□□□□ -0.27
LIG1-212ENST00000596549 LATO43561 262 aa13.36□□□□□ -0.27
LIG1-212ENST00000596549 PLRG1O43660 514 aaKnown RBP13.36□□□□□ -0.27
LIG1-212ENST00000596549 BNIP3LO60238 219 aa13.36□□□□□ -0.27
LIG1-212ENST00000596549 RTN2O75298 545 aa13.36□□□□□ -0.27
LIG1-212ENST00000596549 CALB1P05937 261 aa13.36□□□□□ -0.27
LIG1-212ENST00000596549 KRT3P12035 628 aa13.36□□□□□ -0.27
LIG1-212ENST00000596549 GPD1P21695 349 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms