RNA–Protein interactions for RNA: ENST00000592927.5

DDX39A-219, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-219ENST00000592927 C1orf74Q96LT6 269 aa12.22□□□□□ -0.45
DDX39A-219ENST00000592927 BBC3Q96PG8 261 aaPredicted RBP12.22□□□□□ -0.45
DDX39A-219ENST00000592927 PEBP4Q96S96 227 aa12.22□□□□□ -0.45
DDX39A-219ENST00000592927 PRDM16Q9HAZ2 1276 aa12.22□□□□□ -0.45
DDX39A-219ENST00000592927 TMPRSS4Q9NRS4 437 aa12.22□□□□□ -0.45
DDX39A-219ENST00000592927 SMARCAL1Q9NZC9 954 aa12.22□□□□□ -0.45
DDX39A-219ENST00000592927 MARK1Q9P0L2 795 aa12.22□□□□□ -0.45
DDX39A-219ENST00000592927 GPSM3Q9Y4H4 160 aa12.22□□□□□ -0.45
DDX39A-219ENST00000592927 DMXL2Q8TDJ6 3036 aa12.22□□□□□ -0.45
DDX39A-219ENST00000592927 hCG_1818297A0A087WSY0 165 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 C3orf70A6NLC5 250 aaPredicted RBP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 C4orf47A7E2U8 309 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 SPECC1L-ADORA2AF8WAN1 911 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 I6L893 689 aaPredicted RBP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 GFRA2O00451 464 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 HOXC11O43248 304 aaPredicted RBP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 PHF2O75151 1096 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 EPN2O95208 641 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 TYRP14679 529 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 MCM3P25205 808 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 HOXC13P31276 330 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 CHRNA3P32297 505 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 GJA4P35212 333 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 GGCXP38435 758 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 CDKN2BP42772 138 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 SOX9P48436 509 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 ARSEP51690 589 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 ZNF135P52742 658 aaPredicted RBP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 CDH6P55285 790 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 SCAPQ12770 1279 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 KLF1Q13351 362 aaPredicted RBP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 DPYSL2Q16555 572 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 CYP1B1Q16678 543 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 KCNT1Q5JUK3 1230 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 RABGAP1LQ5R372 815 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 FYB2Q5VWT5 728 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 TXNRD3NBQ6F5E7 133 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 FBXL22Q6P050 247 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 AADACL2Q6P093 401 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 C1orf228Q6PIY5 440 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 MFSD7Q6UXD7 560 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 MAATS1Q7Z4T9 603 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 RALGPS2Q86X27 583 aaPredicted RBP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 SPEM1Q8N4L4 309 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 NOA1Q8NC60 698 aaKnown RBP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 CCDC26Q8TAB7 109 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 RAPGEF5Q92565 580 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 HSPH1Q92598 858 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 EXOC4Q96A65 974 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 RNF25Q96BH1 459 aaPredicted RBP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 MSANTD3Q96H12 275 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 RPRD1AQ96P16 312 aaPredicted RBP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 XPO6Q96QU8 1125 aaKnown RBP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 PRMT1Q99873 361 aaKnown RBP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 ZNF670Q9BS34 389 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 SNRNP25Q9BV90 132 aaKnown RBP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 AP1M1Q9BXS5 423 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 FRMD8P1Q9BZ68 369 aaPredicted RBP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 OSBPL2Q9H1P3 480 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 PLK2Q9NYY3 685 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 RCOR3Q9P2K3 495 aaPredicted RBP12.21□□□□□ -0.45
DDX39A-219ENST00000592927 OR12D3Q9UGF7 316 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 VANGL2Q9ULK5 521 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 FZD10Q9ULW2 581 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 SNX10Q9Y5X0 201 aa12.21□□□□□ -0.45
DDX39A-219ENST00000592927 AKAP13Q12802 2813 aa12.21□□□□□ -0.46
DDX39A-219ENST00000592927 LOC400499M0QZD8 3231 aa12.21□□□□□ -0.46
DDX39A-219ENST00000592927 TBL1XO60907 577 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 PENKP01210 267 aaPredicted RBP12.2□□□□□ -0.46
DDX39A-219ENST00000592927 CHRNB1P11230 501 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 CTHP32929 405 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 FNTAP49354 379 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 SGSHP51688 502 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 RPS24P62847 133 aaKnown RBP12.2□□□□□ -0.46
DDX39A-219ENST00000592927 DHX34Q14147 1143 aaKnown RBP12.2□□□□□ -0.46
DDX39A-219ENST00000592927 TFDP2Q14188 446 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 KRT81Q14533 505 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 SMTNL2Q2TAL5 461 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 COL28A1Q2UY09 1125 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 MPP7Q5T2T1 576 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 TTC39BQ5VTQ0 682 aaPredicted RBP12.2□□□□□ -0.46
DDX39A-219ENST00000592927 TCEAL6Q6IPX3 200 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 C8orf74Q6P047 294 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 C14orf80Q86SX3 495 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 KBTBD6Q86V97 674 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 CCDC117Q8IWD4 279 aaPredicted RBP12.2□□□□□ -0.46
DDX39A-219ENST00000592927 CFAP52Q8N1V2 620 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 NAT16Q8N8M0 369 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 TTC13Q8NBP0 860 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 TCEAL3Q969E4 200 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 PRICKLE1Q96MT3 831 aaPredicted RBP12.2□□□□□ -0.46
DDX39A-219ENST00000592927 KRT12Q99456 494 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 MAK16Q9BXY0 300 aaKnown RBP12.2□□□□□ -0.46
DDX39A-219ENST00000592927 DHX35Q9H5Z1 703 aaKnown RBP12.2□□□□□ -0.46
DDX39A-219ENST00000592927 LRRC19Q9H756 370 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 STIM2Q9P246 746 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 FEZ2Q9UHY8 353 aaPredicted RBP12.2□□□□□ -0.46
DDX39A-219ENST00000592927 AP4E1Q9UPM8 1137 aa12.2□□□□□ -0.46
DDX39A-219ENST00000592927 NEUROG3Q9Y4Z2 214 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms