RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 HBS1LQ9Y450 684 aaKnown RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 NYNRINQ9P2P1 1898 aaKnown RBP11.5□□□□□ -0.57
LIG3-204ENST00000585740 MIA3Q5JRA6 1907 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 IGLV3-10A0A075B6K4 115 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.49□□□□□ -0.57
LIG3-204ENST00000585740 SLC38A8A6NNN8 435 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 F5H423 210 aaPredicted RBP11.49□□□□□ -0.57
LIG3-204ENST00000585740 GOLGA8RI6L899 631 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 KLF11O14901 512 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 MAFKO60675 156 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 RFPL1O75677 317 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 ZDHHC11BP0C7U3 371 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 TROVE2P10155 538 aaKnown RBP eCLIP11.49□□□□□ -0.57
LIG3-204ENST00000585740 NEFHP12036 1026 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 SYN1P17600 705 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 ADRA1DP25100 572 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 ALDH3A1P30838 453 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 GP5P40197 560 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 ETV4P43268 484 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 MAGEA10P43363 369 aaPredicted RBP11.49□□□□□ -0.57
LIG3-204ENST00000585740 ALDH7A1P49419 539 aaKnown RBP11.49□□□□□ -0.57
LIG3-204ENST00000585740 GATMP50440 423 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 CSE1LP55060 971 aaKnown RBP11.49□□□□□ -0.57
LIG3-204ENST00000585740 ACTN3Q08043 901 aaPredicted RBP11.49□□□□□ -0.57
LIG3-204ENST00000585740 CCDC15Q0P6D6 951 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 TAF10Q12962 218 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 IKBKEQ14164 716 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 PIK3R6Q5UE93 754 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 PACS1Q6VY07 963 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 RNF19BQ6ZMZ0 732 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 TMEM135Q86UB9 458 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 ZSCAN18Q8TBC5 510 aaPredicted RBP11.49□□□□□ -0.57
LIG3-204ENST00000585740 NSMCE1Q8WV22 266 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 PTCD2Q8WV60 388 aaKnown RBP11.49□□□□□ -0.57
LIG3-204ENST00000585740 ATP2A3Q93084 1043 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 ZNF669Q96BR6 464 aaPredicted RBP11.49□□□□□ -0.57
LIG3-204ENST00000585740 CERS2Q96G23 380 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 SRPK1Q96SB4 655 aaKnown RBP11.49□□□□□ -0.57
LIG3-204ENST00000585740 SEPT5Q99719 369 aaPredicted RBP11.49□□□□□ -0.57
LIG3-204ENST00000585740 TBL1YQ9BQ87 522 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 GORASP1Q9BQQ3 440 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 CRISPLD2Q9H0B8 497 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 RASSF4Q9H2L5 321 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 ENTPD7Q9NQZ7 604 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 OSER1Q9NX31 292 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 ZFATQ9P243 1243 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 PRKAG3Q9UGI9 489 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 SOX13Q9UN79 622 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 PLLPQ9Y342 182 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 USH1CQ9Y6N9 552 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 RPS6KL1Q9Y6S9 549 aa11.49□□□□□ -0.57
LIG3-204ENST00000585740 SLC12A8A0AV02 714 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 DRGXA6NNA5 263 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 GLRA3O75311 464 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 PIAS1O75925 651 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 IGLV3-27P01718 113 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 CRHR1P34998 444 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 SPRP35270 261 aaPredicted RBP11.48□□□□□ -0.57
LIG3-204ENST00000585740 HADHAP40939 763 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 SERPINB4P48594 390 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 MAPKAPK2P49137 400 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 PGFP49763 221 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 PAPOLAP51003 745 aaKnown RBP11.48□□□□□ -0.57
LIG3-204ENST00000585740 RENBPP51606 427 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 USP46P62068 366 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 MPP3Q13368 585 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 HNRNPDQ14103 355 aaKnown RBP11.48□□□□□ -0.57
LIG3-204ENST00000585740 PSMD5Q16401 504 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 INSCQ1MX18 579 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 ANKRD20A4Q4UJ75 823 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 MS4A13Q5J8X5 152 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 RTP2Q5QGT7 225 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 C10orf120Q5SQS8 335 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 ATG16L1Q676U5 607 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 SLC8B1Q6J4K2 584 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 KYAT3Q6YP21 454 aaKnown RBP11.48□□□□□ -0.57
LIG3-204ENST00000585740 C14orf80Q86SX3 495 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 C10orf67Q8IYJ2 551 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 ZNF683Q8IZ20 524 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 FBXO22Q8NEZ5 403 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 SCLYQ96I15 445 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 KLF6Q99612 283 aaPredicted RBP11.48□□□□□ -0.57
LIG3-204ENST00000585740 MANSC1Q9H8J5 431 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 MRM3Q9HC36 420 aaKnown RBP11.48□□□□□ -0.57
LIG3-204ENST00000585740 SLC17A7Q9P2U7 560 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 AFF4Q9UHB7 1163 aaKnown RBP11.48□□□□□ -0.57
LIG3-204ENST00000585740 DCDC2Q9UHG0 476 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 IPO11Q9UI26 975 aaKnown RBP11.48□□□□□ -0.57
LIG3-204ENST00000585740 GRID1Q9ULK0 1009 aa11.48□□□□□ -0.57
LIG3-204ENST00000585740 LTBP2Q14767 1821 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 H0YHG0 523 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 BIRC5O15392 142 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 DCTN3O75935 186 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 DNAJC8O75937 253 aaPredicted RBP11.47□□□□□ -0.57
LIG3-204ENST00000585740 TGDSO95455 350 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 EFEMP2O95967 443 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 LIG3P49916 1009 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 CCL23P55773 120 aa11.47□□□□□ -0.57
LIG3-204ENST00000585740 YBEYP58557 167 aaPredicted RBP11.47□□□□□ -0.57
LIG3-204ENST00000585740 TNK2Q07912 1038 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms