RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 FERMT1Q9BQL6 677 aa16.5■□□□□ 0.23
SS18-226ENST00000585241 FEM1AQ9BSK4 669 aa16.5■□□□□ 0.23
SS18-226ENST00000585241 TRMT61BQ9BVS5 477 aaKnown RBP16.5■□□□□ 0.23
SS18-226ENST00000585241 EBF3Q9H4W6 596 aa16.5■□□□□ 0.23
SS18-226ENST00000585241 FAM50BQ9Y247 325 aa16.5■□□□□ 0.23
SS18-226ENST00000585241 TARSL2A2RTX5 802 aaKnown RBP16.49■□□□□ 0.23
SS18-226ENST00000585241 OTOL1A6NHN0 477 aaPredicted RBP16.49■□□□□ 0.23
SS18-226ENST00000585241 GCATO75600 419 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 ZMPSTE24O75844 475 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 KRT14P02533 472 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 MZF1P28698 734 aaPredicted RBP16.49■□□□□ 0.23
SS18-226ENST00000585241 HLA-FP30511 346 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 GDI1P31150 447 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 CLCN6P51797 869 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 RUNX3Q13761 415 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 DMC1Q14565 340 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 PLEKHG6Q3KR16 790 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 DUPD1Q68J44 220 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 ASTLQ6HA08 431 aaPredicted RBP16.49■□□□□ 0.23
SS18-226ENST00000585241 B4GALNT4Q76KP1 1039 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 CCDC89Q8N998 374 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 GLIS1Q8NBF1 620 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 ST13P5Q8NFI4 369 aaPredicted RBP16.49■□□□□ 0.23
SS18-226ENST00000585241 MAFAQ8NHW3 353 aaPredicted RBP16.49■□□□□ 0.23
SS18-226ENST00000585241 LRRN4Q8WUT4 740 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 RUBCNQ92622 972 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 ZNF599Q96NL3 588 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 XPO6Q96QU8 1125 aaKnown RBP16.49■□□□□ 0.23
SS18-226ENST00000585241 IL12RB2Q99665 862 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 ERP44Q9BS26 406 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 ATP13A1Q9HD20 1204 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 TRPV5Q9NQA5 729 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 IGSF9Q9P2J2 1179 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 DMGDHQ9UI17 866 aaKnown RBP16.49■□□□□ 0.23
SS18-226ENST00000585241 SLC27A6Q9Y2P4 619 aa16.49■□□□□ 0.23
SS18-226ENST00000585241 SPTBN5Q9NRC6 3674 aaKnown RBP16.48■□□□□ 0.23
SS18-226ENST00000585241 COL4A2P08572 1712 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.48■□□□□ 0.23
SS18-226ENST00000585241 A0A0A0MRY4 1105 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 ZSCAN5CA6NGD5 496 aaPredicted RBP16.48■□□□□ 0.23
SS18-226ENST00000585241 J3KR12 359 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 OPHN1O60890 802 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 HEXIM1O94992 359 aaKnown RBP16.48■□□□□ 0.23
SS18-226ENST00000585241 CISD3P0C7P0 127 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 PTPN3P26045 913 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 CD70P32970 193 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 DRG2P55039 364 aaKnown RBP16.48■□□□□ 0.23
SS18-226ENST00000585241 MRPS25P82663 173 aaKnown RBP16.48■□□□□ 0.23
SS18-226ENST00000585241 NR1H3Q13133 447 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 HNRNPDQ14103 355 aaKnown RBP16.48■□□□□ 0.23
SS18-226ENST00000585241 PPP1R7Q15435 360 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 C4orf22Q6V702 233 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 GSTA5Q7RTV2 222 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 TEX26Q8N6G2 289 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 SPATA13Q96N96 652 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 TRIM51Q9BSJ1 452 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 RAB17Q9H0T7 212 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 MUC3BQ9H195 1237 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 ANKZF1Q9H8Y5 726 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 SP110Q9HB58 689 aa16.48■□□□□ 0.23
SS18-226ENST00000585241 INTS6Q9UL03 887 aaKnown RBP16.48■□□□□ 0.23
SS18-226ENST00000585241 LOC730098B7Z3J9 87 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 KCNK1O00180 336 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 RNF103O00237 685 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 STK10O94804 968 aaKnown RBP16.47■□□□□ 0.23
SS18-226ENST00000585241 IFNB1P01574 187 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 RHOXF2BP0C7M4 288 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 PABPC1P11940 636 aaKnown RBP16.47■□□□□ 0.23
SS18-226ENST00000585241 SP100P23497 879 aaPredicted RBP16.47■□□□□ 0.23
SS18-226ENST00000585241 IVDP26440 423 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 RPL22P35268 128 aaKnown RBP16.47■□□□□ 0.23
SS18-226ENST00000585241 EIF2DP41214 584 aaKnown RBP16.47■□□□□ 0.23
SS18-226ENST00000585241 NRLP54845 237 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 ARF5P84085 180 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 ZBTB17Q13105 803 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 RFTN1Q14699 578 aaPredicted RBP16.47■□□□□ 0.23
SS18-226ENST00000585241 ERCC6LQ2NKX8 1250 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 ITPRIPL2Q3MIP1 535 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 TEX44Q53QW1 395 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 TMCO4Q5TGY1 634 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 IL31Q6EBC2 164 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 C12orf40Q86WS4 652 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 APCDD1Q8J025 514 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 WFIKKN2Q8TEU8 576 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 ACDQ96AP0 544 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 ZNF419Q96HQ0 510 aaPredicted RBP16.47■□□□□ 0.23
SS18-226ENST00000585241 RHOXF2Q9BQY4 288 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 C2orf49Q9BVC5 232 aaPredicted RBP16.47■□□□□ 0.23
SS18-226ENST00000585241 KCNK12Q9HB15 430 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 ABCB8Q9NUT2 735 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 PAK5Q9P286 719 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 VPS51Q9UID3 782 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 GGA2Q9UJY4 613 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 VPS28Q9UK41 221 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 TRHDEQ9UKU6 1024 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 UTP11Q9Y3A2 253 aaKnown RBP16.47■□□□□ 0.23
SS18-226ENST00000585241 SHROOM3Q8TF72 1996 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 KIAA1549LQ6ZVL6 1849 aa16.47■□□□□ 0.23
SS18-226ENST00000585241 TULP3O75386 442 aa16.46■□□□□ 0.23
SS18-226ENST00000585241 CD160O95971 181 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms