RNA–Protein interactions for RNA: ENST00000584112.1

CCDC47-206, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2

Gene CCDC47, Length 588 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-206ENST00000584112 NUP58Q9BVL2 599 aa11.5□□□□□ -0.57
CCDC47-206ENST00000584112 GPR174Q9BXC1 333 aa11.5□□□□□ -0.57
CCDC47-206ENST00000584112 DPH1Q9BZG8 443 aa11.5□□□□□ -0.57
CCDC47-206ENST00000584112 NUP62CLQ9H1M0 184 aa11.5□□□□□ -0.57
CCDC47-206ENST00000584112 PCED1AQ9H1Q7 454 aa11.5□□□□□ -0.57
CCDC47-206ENST00000584112 TMEM245Q9H330 911 aa11.5□□□□□ -0.57
CCDC47-206ENST00000584112 STIM2Q9P246 746 aa11.5□□□□□ -0.57
CCDC47-206ENST00000584112 SUN2Q9UH99 717 aa11.5□□□□□ -0.57
CCDC47-206ENST00000584112 SLC12A6Q9UHW9 1150 aa11.5□□□□□ -0.57
CCDC47-206ENST00000584112 CYTH4Q9UIA0 394 aa11.5□□□□□ -0.57
CCDC47-206ENST00000584112 PCDHGC3Q9UN70 934 aa11.5□□□□□ -0.57
CCDC47-206ENST00000584112 PLAAQ9Y263 795 aa11.5□□□□□ -0.57
CCDC47-206ENST00000584112 CEP83Q9Y592 693 aa11.5□□□□□ -0.57
CCDC47-206ENST00000584112 SNX11Q9Y5W9 270 aa11.5□□□□□ -0.57
CCDC47-206ENST00000584112 LRRK1Q38SD2 2015 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 KCNJ18B7U540 433 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 MOCS3O95396 460 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 TRUB2O95900 331 aaKnown RBP11.49□□□□□ -0.57
CCDC47-206ENST00000584112 MOCS2O96007 188 aaPredicted RBP11.49□□□□□ -0.57
CCDC47-206ENST00000584112 IGLV3-25P01717 112 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 SLC2A3P11169 496 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 KRT9P35527 623 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 ANP32AP39687 249 aaKnown RBP11.49□□□□□ -0.57
CCDC47-206ENST00000584112 CSNK1EP49674 416 aaKnown RBP11.49□□□□□ -0.57
CCDC47-206ENST00000584112 ACADVLP49748 655 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 BPIFB4P59827 614 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 CDK17Q00537 523 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 ZBTB16Q05516 673 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 MTA1Q13330 715 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 KIF19Q2TAC6 998 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 DCAF6Q58WW2 860 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 MS4A13Q5J8X5 152 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 CT47A1Q5JQC4 288 aaPredicted RBP11.49□□□□□ -0.57
CCDC47-206ENST00000584112 EFHC1Q5JVL4 640 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 SYPL2Q5VXT5 272 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 CACUL1Q86Y37 369 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 CARNMT1Q8N4J0 409 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 WFDC5Q8TCV5 224 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 DNASE2BQ8WZ79 361 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 PPP1R13BQ96KQ4 1090 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 PRICKLE1Q96MT3 831 aaPredicted RBP11.49□□□□□ -0.57
CCDC47-206ENST00000584112 NUCKS1Q9H1E3 243 aaKnown RBP11.49□□□□□ -0.57
CCDC47-206ENST00000584112 LHX5Q9H2C1 402 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 NDST4Q9H3R1 872 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 FAM204AQ9H8W3 233 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 ACP6Q9NPH0 428 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.49□□□□□ -0.57
CCDC47-206ENST00000584112 ASNSD1Q9NWL6 643 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 TJP2Q9UDY2 1190 aa11.49□□□□□ -0.57
CCDC47-206ENST00000584112 CHD5Q8TDI0 1954 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 CSMD2Q7Z408 3487 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 HSF2BPO75031 334 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 LUC7L3O95232 432 aaKnown RBP11.48□□□□□ -0.57
CCDC47-206ENST00000584112 DNTTP04053 509 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 C7P10643 843 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 ABCB4P21439 1286 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 RPS24P62847 133 aaKnown RBP11.48□□□□□ -0.57
CCDC47-206ENST00000584112 APBA1Q02410 837 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 NCAPHQ15003 741 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 DPCR1Q3MIW9 517 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 TTC31Q49AM3 519 aaPredicted RBP11.48□□□□□ -0.57
CCDC47-206ENST00000584112 VWA3BQ502W6 1294 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 ZC3H12AQ5D1E8 599 aaKnown RBP11.48□□□□□ -0.57
CCDC47-206ENST00000584112 TTC39BQ5VTQ0 682 aaPredicted RBP11.48□□□□□ -0.57
CCDC47-206ENST00000584112 CHSY1Q86X52 802 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 PASD1Q8IV76 773 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 LGI2Q8N0V4 545 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 ZNF366Q8N895 744 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 KDM1BQ8NB78 822 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 TTC17Q96AE7 1141 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 CNDP2Q96KP4 475 aaKnown RBP11.48□□□□□ -0.57
CCDC47-206ENST00000584112 LMLNQ96KR4 655 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 CPXM1Q96SM3 734 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 TUBGCP2Q9BSJ2 902 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 SYNCQ9H7C4 482 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 SIX2Q9NPC8 291 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 TMPRSS4Q9NRS4 437 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 DNAJC12Q9UKB3 198 aa11.48□□□□□ -0.57
CCDC47-206ENST00000584112 METTL12A8MUP2 240 aa11.47□□□□□ -0.57
CCDC47-206ENST00000584112 KCNU1A8MYU2 1149 aa11.47□□□□□ -0.57
CCDC47-206ENST00000584112 F5H5T6 163 aa11.47□□□□□ -0.57
CCDC47-206ENST00000584112 FOXN3O00409 490 aaPredicted RBP11.47□□□□□ -0.57
CCDC47-206ENST00000584112 PES1O00541 588 aaKnown RBP11.47□□□□□ -0.57
CCDC47-206ENST00000584112 BCAT2O15382 392 aaPredicted RBP11.47□□□□□ -0.57
CCDC47-206ENST00000584112 EFSO43281 561 aa11.47□□□□□ -0.57
CCDC47-206ENST00000584112 RNASEH1O60930 286 aaKnown RBP11.47□□□□□ -0.57
CCDC47-206ENST00000584112 SRPRAP08240 638 aaKnown RBP11.47□□□□□ -0.57
CCDC47-206ENST00000584112 TACR2P21452 398 aa11.47□□□□□ -0.57
CCDC47-206ENST00000584112 CCR1P32246 355 aa11.47□□□□□ -0.57
CCDC47-206ENST00000584112 CSKP41240 450 aa11.47□□□□□ -0.57
CCDC47-206ENST00000584112 OXCT1P55809 520 aa11.47□□□□□ -0.57
CCDC47-206ENST00000584112 GABREP78334 506 aa11.47□□□□□ -0.57
CCDC47-206ENST00000584112 SFSWAPQ12872 951 aaKnown RBP11.47□□□□□ -0.57
CCDC47-206ENST00000584112 SLC12A1Q13621 1099 aa11.47□□□□□ -0.57
CCDC47-206ENST00000584112 ZSCAN23Q3MJ62 389 aa11.47□□□□□ -0.57
CCDC47-206ENST00000584112 ARL13BQ3SXY8 428 aa11.47□□□□□ -0.57
CCDC47-206ENST00000584112 RABGAP1LQ5R372 815 aa11.47□□□□□ -0.57
CCDC47-206ENST00000584112 DCAF12L1Q5VU92 463 aa11.47□□□□□ -0.57
CCDC47-206ENST00000584112 RNF219Q5W0B1 726 aaPredicted RBP11.47□□□□□ -0.57
CCDC47-206ENST00000584112 RAP1GAP2Q684P5 730 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms