RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	ELOVL1	Q9BW60	279 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	HDHD5	Q9BXW7	423 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	TEX101	Q9BY14	249 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	ANKRD2	Q9GZV1	360 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	OPA3	Q9H6K4	179 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	YY1AP1	Q9H869	796 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	DBNDD1	Q9H9R9	158 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	5.18	□□□□□ -1.58
SS18-223	ENST00000583595	MRPL15	Q9P015	296 aa	Known RBP	5.18	□□□□□ -1.58
SS18-223	ENST00000583595	ING1	Q9UK53	422 aa	Predicted RBP	5.18	□□□□□ -1.58
SS18-223	ENST00000583595	GTF3C4	Q9UKN8	822 aa		5.18	□□□□□ -1.58
SS18-223	ENST00000583595	COPG1	Q9Y678	874 aa	Known RBP	5.18	□□□□□ -1.58
SS18-223	ENST00000583595	AQR	O60306	1485 aa	Known RBP eCLIP	5.18	□□□□□ -1.58
SS18-223	ENST00000583595	POLA1	P09884	1462 aa	Predicted RBP	5.18	□□□□□ -1.58
SS18-223	ENST00000583595	KRTAP23-1	A1A580	65 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	VGLL3	A8MV65	326 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	GCOM1	H8Y6P7	765 aa	Predicted RBP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	SNAP23	O00161	211 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	TRIM24	O15164	1050 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	LDLRAD4	O15165	306 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	BCAT2	O15382	392 aa	Predicted RBP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	NARS	O43776	548 aa	Known RBP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	SEC14L2	O76054	403 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	SEC31A	O94979	1220 aa	Known RBP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	TUBB	P07437	444 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	MMP8	P22894	467 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	TBXAS1	P24557	533 aa	Predicted RBP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	TTK	P33981	857 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	CLK1	P49759	484 aa	Known RBP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	HNRNPM	P52272	730 aa	Known RBP eCLIP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	DGKQ	P52824	942 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	EIF3B	P55884	814 aa	Known RBP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	OCA2	Q04671	838 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	EIF2B5	Q13144	721 aa	Known RBP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	CRHR2	Q13324	411 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	FRG1	Q14331	258 aa	Known RBP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	RRP1B	Q14684	758 aa	Known RBP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	HLX	Q14774	488 aa	Predicted RBP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	FAM187B	Q17R55	369 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	AP5B1	Q2VPB7	878 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	FBXO43	Q4G163	708 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	LRCH2	Q5VUJ6	765 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	ADAL	Q6DHV7	355 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	MICALCL	Q6ZW33	695 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	SLFN11	Q7Z7L1	901 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	CEP57L1	Q8IYX8	460 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	ANKRD35	Q8N283	1001 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	POC5	Q8NA72	575 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	MDGA1	Q8NFP4	955 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	MGARP	Q8TDB4	240 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	CACTIN	Q8WUQ7	758 aa	Known RBP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	SNX19	Q92543	992 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	CNOT9	Q92600	299 aa	Known RBP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	TMEM125	Q96AQ2	219 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	VPS33A	Q96AX1	596 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	CTHRC1	Q96CG8	243 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	KLHL29	Q96CT2	875 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	PGAP3	Q96FM1	320 aa	Predicted RBP	5.17	□□□□□ -1.58
SS18-223	ENST00000583595	SCPEP1	Q9HB40	452 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	RXFP3	Q9NSD7	469 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	TAB2	Q9NYJ8	693 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	MPP6	Q9NZW5	540 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	WDR35	Q9P2L0	1181 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	PEMT	Q9UBM1	199 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	HDAC6	Q9UBN7	1215 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	MKLN1	Q9UL63	735 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	OSGIN2	Q9Y236	505 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	NUDC	Q9Y266	331 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	CAPN7	Q9Y6W3	813 aa		5.17	□□□□□ -1.58
SS18-223	ENST00000583595	RAD54L2	Q9Y4B4	1467 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	CYP3A7-CYP3A51P	A0A087WV96	503 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595		A1L4Q6	167 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	URAD	A6NGE7	173 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	SPRY2	O43597	315 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	LIAS	O43766	372 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	TACC1	O75410	805 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	METTL18	O95568	372 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	QDPR	P09417	244 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	ATP6V1B1	P15313	513 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	IFNAR1	P17181	557 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	SAT1	P21673	171 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	CYP3A7	P24462	503 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	APOBEC3A	P31941	199 aa	Predicted RBP	5.16	□□□□□ -1.58
SS18-223	ENST00000583595	CPOX	P36551	454 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	IGHMBP2	P38935	993 aa	Known RBP	5.16	□□□□□ -1.58
SS18-223	ENST00000583595	RAD23A	P54725	363 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	RPS7	P62081	194 aa	Known RBP	5.16	□□□□□ -1.58
SS18-223	ENST00000583595	OLR1	P78380	273 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	TLE3	Q04726	772 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	DDR1	Q08345	913 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	GOLGA8F	Q08AF8	430 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	ABHD18	Q0P651	414 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	DNASE1L3	Q13609	305 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	ALKBH1	Q13686	389 aa	Known RBP	5.16	□□□□□ -1.58
SS18-223	ENST00000583595	BYSL	Q13895	437 aa	Known RBP	5.16	□□□□□ -1.58
SS18-223	ENST00000583595	GKAP1	Q5VSY0	366 aa	Predicted RBP	5.16	□□□□□ -1.58
SS18-223	ENST00000583595	WDR93	Q6P2C0	686 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	DCLRE1A	Q6PJP8	1040 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	DPY19L3	Q6ZPD9	716 aa		5.16	□□□□□ -1.58
SS18-223	ENST00000583595	CLEC17A	Q6ZS10	378 aa		5.16	□□□□□ -1.58

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