RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 LZTR1Q8N653 840 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 KDM1BQ8NB78 822 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 TTC17Q96AE7 1141 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 P2RY11Q96G91 374 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 LMLNQ96KR4 655 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 FBRSL1Q9HCM7 1045 aaKnown RBP21.12■□□□□ 0.97
VPS53-210ENST00000571456 ELOVL2Q9NXB9 296 aa21.12■□□□□ 0.97
VPS53-210ENST00000571456 DAPK3O43293 454 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 CNTN5O94779 1100 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 EPN2O95208 641 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 HNRNPLP14866 589 aaKnown RBP eCLIP21.11■□□□□ 0.97
VPS53-210ENST00000571456 VASPP50552 380 aaPredicted RBP21.11■□□□□ 0.97
VPS53-210ENST00000571456 YBEYP58557 167 aaPredicted RBP21.11■□□□□ 0.97
VPS53-210ENST00000571456 LMAN2Q12907 356 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 FOXC1Q12948 553 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 KRT81Q14533 505 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 SMTNL2Q2TAL5 461 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 PLEKHG6Q3KR16 790 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 ALFQ53S48 1182 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 KCNT1Q5JUK3 1230 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 ARTNQ5T4W7 220 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 RFX8Q6ZV50 586 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 PYROXD2Q8N2H3 581 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 HSPH1Q92598 858 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 KCTD15Q96SI1 283 aaPredicted RBP21.11■□□□□ 0.97
VPS53-210ENST00000571456 ZNF670Q9BS34 389 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 MAGEH1Q9H213 219 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 MPP6Q9NZW5 540 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 ZNF212Q9UDV6 495 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 SALL4Q9UJQ4 1053 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 CLEC4EQ9ULY5 219 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 WASF3Q9UPY6 502 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 NEU3Q9UQ49 428 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 PPP2R2CQ9Y2T4 447 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 SNX10Q9Y5X0 201 aa21.11■□□□□ 0.97
VPS53-210ENST00000571456 BUB1O43683 1085 aa21.1■□□□□ 0.97
VPS53-210ENST00000571456 HOXA6P31267 233 aa21.1■□□□□ 0.97
VPS53-210ENST00000571456 KIR2DL1P43626 348 aaPredicted RBP21.1■□□□□ 0.97
VPS53-210ENST00000571456 NOVA1P51513 510 aaKnown RBP21.1■□□□□ 0.97
VPS53-210ENST00000571456 CDH6P55285 790 aa21.1■□□□□ 0.97
VPS53-210ENST00000571456 TAS2R40P59535 323 aa21.1■□□□□ 0.97
VPS53-210ENST00000571456 GEN1Q17RS7 908 aa21.1■□□□□ 0.97
VPS53-210ENST00000571456 SDE2Q6IQ49 451 aa21.1■□□□□ 0.97
VPS53-210ENST00000571456 WDR5BQ86VZ2 330 aa21.1■□□□□ 0.97
VPS53-210ENST00000571456 KCTD6Q8NC69 237 aa21.1■□□□□ 0.97
VPS53-210ENST00000571456 USP33Q8TEY7 942 aa21.1■□□□□ 0.97
VPS53-210ENST00000571456 FEM1AQ9BSK4 669 aa21.1■□□□□ 0.97
VPS53-210ENST00000571456 C2orf49Q9BVC5 232 aaPredicted RBP21.1■□□□□ 0.97
VPS53-210ENST00000571456 PCDH18Q9HCL0 1135 aa21.1■□□□□ 0.97
VPS53-210ENST00000571456 TFR2Q9UP52 801 aa21.1■□□□□ 0.97
VPS53-210ENST00000571456 PLA2G4CQ9UP65 541 aa21.1■□□□□ 0.97
VPS53-210ENST00000571456 DUSP10Q9Y6W6 482 aa21.1■□□□□ 0.97
VPS53-210ENST00000571456 HELZ2Q9BYK8 2649 aaKnown RBP21.1■□□□□ 0.97
VPS53-210ENST00000571456 ASH1LQ9NR48 2969 aaKnown RBP21.1■□□□□ 0.97
VPS53-210ENST00000571456 MACROD2A1Z1Q3 448 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 CCDC66A2RUB6 948 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 MIF4GDA9UHW6 222 aaKnown RBP21.09■□□□□ 0.97
VPS53-210ENST00000571456 PRRT4C9JH25 899 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 RNF40O75150 1001 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 SRPRAP08240 638 aaKnown RBP21.09■□□□□ 0.97
VPS53-210ENST00000571456 DLDP09622 509 aaKnown RBP21.09■□□□□ 0.97
VPS53-210ENST00000571456 TCF4P15884 667 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 SPINK2P20155 84 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 CD70P32970 193 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 SERPINB6P35237 376 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 NDST2P52849 883 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 CA9Q16790 459 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 PARP15Q460N3 678 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 FSCBQ5H9T9 825 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 PITRM1Q5JRX3 1037 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 EOGTQ5NDL2 527 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 PLA2G2CQ5R387 149 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 ZFYVE27Q5T4F4 411 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 DAB2IPQ5VWQ8 1189 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 MBLAC2Q68D91 279 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 NAIF1Q69YI7 327 aaPredicted RBP21.09■□□□□ 0.97
VPS53-210ENST00000571456 TFAP2DQ7Z6R9 452 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 ADIPOR2Q86V24 386 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 UMODL1-AS1Q8N2C9 162 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 ZNF513Q8N8E2 541 aaPredicted RBP21.09■□□□□ 0.97
VPS53-210ENST00000571456 LRRC57Q8N9N7 239 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 WFDC5Q8TCV5 224 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 TSC1Q92574 1164 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 EZH1Q92800 747 aaPredicted RBP21.09■□□□□ 0.97
VPS53-210ENST00000571456 ALS2CR12Q96Q35 445 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 MUC3BQ9H195 1237 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 GPATCH2LQ9NWQ4 482 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 CWC15Q9P013 229 aaKnown RBP21.09■□□□□ 0.97
VPS53-210ENST00000571456 THAP10Q9P2Z0 257 aaPredicted RBP21.09■□□□□ 0.97
VPS53-210ENST00000571456 VPS28Q9UK41 221 aa21.09■□□□□ 0.97
VPS53-210ENST00000571456 LOC400499M0QZD8 3231 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 GOLGA6L9A6NEM1 432 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 GIPC1O14908 333 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 TRIM24O15164 1050 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 RAMP2O60895 175 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 GOT1P17174 413 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 NNMTP40261 264 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 IRAK1P51617 712 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 ARSEP51690 589 aa21.08■□□□□ 0.97
VPS53-210ENST00000571456 GEMIN4P57678 1058 aaKnown RBP21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms