RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 PCDHA11Q9Y5I1 949 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 ACTL7BQ9Y614 415 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 NFS1Q9Y697 457 aa8.16□□□□□ -1.1
VPS39-213ENST00000570062 CEP290O15078 2479 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 COL4A4P53420 1690 aaPredicted RBP8.15□□□□□ -1.1
VPS39-213ENST00000570062 RANBP2P49792 3224 aaKnown RBP8.15□□□□□ -1.1
VPS39-213ENST00000570062 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.15□□□□□ -1.1
VPS39-213ENST00000570062 TRAV19A0A0A6YYK7 116 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 SDR42E2A6NKP2 422 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 FAM72CH0Y354 149 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 H3BM21 787 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 ADAM12O43184 909 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 TGM5O43548 720 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 CACNG3O60359 315 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 RAMP2O60895 175 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 SUN1O94901 812 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 OLFM2O95897 454 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 MOCS2O96007 188 aaPredicted RBP8.15□□□□□ -1.1
VPS39-213ENST00000570062 OAS1P00973 400 aaKnown RBP8.15□□□□□ -1.1
VPS39-213ENST00000570062 F11P03951 625 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 CCNB1P14635 433 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 ETS1P14921 441 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 PTPN2P17706 415 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 HDCP19113 662 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 TACR2P21452 398 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 OR1E1P30953 314 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 CA8P35219 290 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 RABGGTBP53611 331 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 GEMP55040 296 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 SLC7A9P82251 487 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 TNK2Q07912 1038 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 IL10RBQ08334 325 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 ZNF844Q08AG5 666 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 ZNF177Q13360 481 aaPredicted RBP8.15□□□□□ -1.1
VPS39-213ENST00000570062 NAB1Q13506 487 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 FRG1Q14331 258 aaKnown RBP8.15□□□□□ -1.1
VPS39-213ENST00000570062 KYNUQ16719 465 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 PPM1LQ5SGD2 360 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 MPP7Q5T2T1 576 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 FAM72AQ5TYM5 149 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 FAM72DQ6L9T8 149 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 C3orf62Q6ZUJ4 267 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 NLRP14Q86W24 1093 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 CHSY1Q86X52 802 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 FAM72BQ86X60 149 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 ZBED8Q8IZ13 594 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 SPPL3Q8TCT6 385 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 GPR152Q8TDT2 470 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 MICAL1Q8TDZ2 1067 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 CDKL2Q92772 493 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 DPF3Q92784 378 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 FCRL5Q96RD9 977 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 TGS1Q96RS0 853 aaKnown RBP8.15□□□□□ -1.1
VPS39-213ENST00000570062 CYTH2Q99418 400 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 LGMNQ99538 433 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 IL12RB2Q99665 862 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 PRMT1Q99873 361 aaKnown RBP8.15□□□□□ -1.1
VPS39-213ENST00000570062 GBA3Q9H227 469 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 LRRC40Q9H9A6 602 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 ASAH2Q9NR71 780 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 VPS45Q9NRW7 570 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 ZDHHC7Q9NXF8 308 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 NINJ2Q9NZG7 142 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 BFARQ9NZS9 450 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 VPS18Q9P253 973 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 RSPH14Q9UHP6 348 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 ZMYND8Q9ULU4 1186 aaPredicted RBP8.15□□□□□ -1.1
VPS39-213ENST00000570062 IKBKGQ9Y6K9 419 aa8.15□□□□□ -1.1
VPS39-213ENST00000570062 SPTBN5Q9NRC6 3674 aaKnown RBP8.15□□□□□ -1.11
VPS39-213ENST00000570062 VCANP13611 3396 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 A0A1B0GVM2 712 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 ILVBLA1L0T0 632 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 TCAF2A6NFQ2 919 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 C2orf71A6NGG8 1288 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 SRRM3A6NNA2 597 aaPredicted RBP8.14□□□□□ -1.11
VPS39-213ENST00000570062 MSI1O43347 362 aaKnown RBP8.14□□□□□ -1.11
VPS39-213ENST00000570062 COCHO43405 550 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 MAFKO60675 156 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 SOAT2O75908 522 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 AP2A1O95782 977 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 CPP00450 1065 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 C8AP07357 584 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 MBL2P11226 248 aaPredicted RBP8.14□□□□□ -1.11
VPS39-213ENST00000570062 PTPN3P26045 913 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 CNTFP26441 200 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 GBP2P32456 591 aaPredicted RBP8.14□□□□□ -1.11
VPS39-213ENST00000570062 GEMIN4P57678 1058 aaKnown RBP8.14□□□□□ -1.11
VPS39-213ENST00000570062 WASHC5Q12768 1159 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 POLD3Q15054 466 aaPredicted RBP8.14□□□□□ -1.11
VPS39-213ENST00000570062 RAB30Q15771 203 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 SLC14A2Q15849 920 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 BBS9Q3SYG4 887 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 PIK3R6Q5UE93 754 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 MARC1Q5VT66 337 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 FBXL22Q6P050 247 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 KLHDC8BQ8IXV7 354 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 ZNF683Q8IZ20 524 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 ZNF567Q8N184 647 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 TTC9BQ8N6N2 239 aa8.14□□□□□ -1.11
VPS39-213ENST00000570062 GLIS1Q8NBF1 620 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms