RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 DNAI1Q9UI46 699 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 NUP205Q92621 2012 aa10.04□□□□□ -0.8
CLK3-220ENST00000567992 EDDM13A0A1B0GTR0 161 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 TARSL2A2RTX5 802 aaKnown RBP10.03□□□□□ -0.8
CLK3-220ENST00000567992 K7ERQ8 282 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 MYO1FO00160 1098 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 EEF2KO00418 725 aaKnown RBP10.03□□□□□ -0.8
CLK3-220ENST00000567992 FGF10O15520 208 aaPredicted RBP10.03□□□□□ -0.8
CLK3-220ENST00000567992 SMAD6O43541 496 aaKnown RBP10.03□□□□□ -0.8
CLK3-220ENST00000567992 ZNF821O75541 412 aaPredicted RBP10.03□□□□□ -0.8
CLK3-220ENST00000567992 EPN2O95208 641 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 RARAP10276 462 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 GOT1P17174 413 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 MAN1A1P33908 653 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 ARSEP51690 589 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 TAS2R40P59535 323 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 TPI1P60174 286 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 ST8SIA6P61647 398 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 RPS14P62263 151 aaKnown RBP10.03□□□□□ -0.8
CLK3-220ENST00000567992 LAIR1Q6GTX8 287 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 KIAA1324Q6UXG2 1013 aaKnown RBP10.03□□□□□ -0.8
CLK3-220ENST00000567992 LINGO4Q6UY18 593 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 RAD9BQ6WBX8 426 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 RFX8Q6ZV50 586 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 CEP68Q76N32 757 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 UMODL1-AS1Q8N2C9 162 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 PGBD3Q8N328 593 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 DCLK2Q8N568 766 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 NPWQ8N729 165 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 SLC35G2Q8TBE7 412 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 FAM71BQ8TC56 605 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 TEKT4Q8WW24 435 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 RFFLQ8WZ73 363 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 TSC1Q92574 1164 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 VOPP1Q96AW1 172 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 SIPA1Q96FS4 1042 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 PPP1R9BQ96SB3 815 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 FAM129BQ96TA1 746 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 NCAPGQ9BPX3 1015 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 LRRC19Q9H756 370 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 FBRSQ9HAH7 460 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 ATP13A1Q9HD20 1204 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 ITM2CQ9NQX7 267 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.03□□□□□ -0.8
CLK3-220ENST00000567992 CWC15Q9P013 229 aaKnown RBP10.03□□□□□ -0.8
CLK3-220ENST00000567992 SUN2Q9UH99 717 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 SLC25A13Q9UJS0 675 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 INTUQ9ULD6 942 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 CYP8B1Q9UNU6 501 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 TFR2Q9UP52 801 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 REXO2Q9Y3B8 237 aaKnown RBP10.03□□□□□ -0.8
CLK3-220ENST00000567992 ACTL7AQ9Y615 435 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 NUMA1Q14980 2115 aa10.03□□□□□ -0.8
CLK3-220ENST00000567992 CXorf51AA0A1B0GTR3 108 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 CBX4O00257 560 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 RAMP2O60895 175 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 ZNF217O75362 1048 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 CD48P09326 243 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 TGM1P22735 817 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 IL4RP24394 825 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 HCAR3P49019 387 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 SERPINH1P50454 418 aaKnown RBP10.02□□□□□ -0.81
CLK3-220ENST00000567992 TPMTP51580 245 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 KRT83P78385 493 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 DLG2Q15700 870 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 BOLA3Q53S33 107 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 PPP6R3Q5H9R7 873 aaPredicted RBP10.02□□□□□ -0.81
CLK3-220ENST00000567992 AFMIDQ63HM1 303 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 C22orf39Q6P5X5 142 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 Q6ZVU0 165 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 POLNQ7Z5Q5 900 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.02□□□□□ -0.81
CLK3-220ENST00000567992 C11orf74Q86VG3 221 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 ARHGAP12Q8IWW6 846 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 CCDC170Q8IYT3 715 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 STK40Q8N2I9 435 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 SPC24Q8NBT2 197 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 RUBCNQ92622 972 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 PRCCQ92733 491 aaPredicted RBP10.02□□□□□ -0.81
CLK3-220ENST00000567992 HMCESQ96FZ2 354 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 SPACA7Q96KW9 195 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 SPON2Q9BUD6 331 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 MAGEH1Q9H213 219 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 CATSPERBQ9H7T0 1116 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 ZWILCHQ9H900 591 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 PCDH18Q9HCL0 1135 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 PARD6AQ9NPB6 346 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 IMPACTQ9P2X3 320 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 MFHAS1Q9Y4C4 1052 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 SDK1Q7Z5N4 2213 aa10.02□□□□□ -0.81
CLK3-220ENST00000567992 DCHS1Q96JQ0 3298 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 RCCD1A6NED2 376 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 C10orf142B7Z368 130 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 RASA4BC9J798 803 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 RNF103O00237 685 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 RASA4O43374 803 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 KDELR3O43731 214 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 NDUFA10O95299 355 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 CTSLP07711 333 aa10.01□□□□□ -0.81
CLK3-220ENST00000567992 RETP07949 1114 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms