RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 RETSATQ6NUM9 610 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 PARM1Q6UWI2 310 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 METTL3Q86U44 580 aaKnown RBP13.1□□□□□ -0.31
CLK3-214ENST00000564096 TMEM25Q86YD3 366 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 IFT20Q8IY31 132 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 AHI1Q8N157 1196 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 WFIKKN2Q8TEU8 576 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 FGF14Q92915 247 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 ACDQ96AP0 544 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 SNF8Q96H20 258 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 SPATA13Q96N96 652 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 FAM83CQ9BQN1 747 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 ERP44Q9BS26 406 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 SPON2Q9BUD6 331 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 FAM129AQ9BZQ8 928 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 EBF3Q9H4W6 596 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 NOL6Q9H6R4 1146 aaKnown RBP13.1□□□□□ -0.31
CLK3-214ENST00000564096 FAM114A2Q9NRY5 505 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 PLK2Q9NYY3 685 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 UBA2Q9UBT2 640 aaPredicted RBP13.1□□□□□ -0.31
CLK3-214ENST00000564096 TRHDEQ9UKU6 1024 aa13.1□□□□□ -0.31
CLK3-214ENST00000564096 UQCRHLA0A096LP55 91 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 CXorf51AA0A1B0GTR3 108 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 GOLGA6CA6NDK9 693 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 GOLGA6BA6NDN3 693 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 C5orf60A6NFR6 353 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 C2CD4DB7Z1M9 353 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 ANHXE9PGG2 379 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 KCNK1O00180 336 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 CBX4O00257 560 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 CTIFO43310 598 aaKnown RBP13.09□□□□□ -0.31
CLK3-214ENST00000564096 KDELR3O43731 214 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 MAFKO60675 156 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 PRAMEF11O60813 436 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 UQCRHP07919 91 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 GOLGA6DP0CG33 693 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 ARSAP15289 507 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 GDI1P31150 447 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 ADCY8P40145 1251 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 VPS41P49754 854 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 GDF10P55107 478 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 SULT2A1Q06520 285 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 LMAN2Q12907 356 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 MYO9BQ13459 2157 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 CUL1Q13616 776 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 ZNF235Q14590 738 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 ELF2Q15723 593 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 ERCC6LQ2NKX8 1250 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 PTCRAQ6ISU1 281 aaPredicted RBP13.09□□□□□ -0.31
CLK3-214ENST00000564096 RHBDF2Q6PJF5 856 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 PCGF5Q86SE9 256 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 ADGRG2Q8IZP9 1017 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 NETO2Q8NC67 525 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 OR7D4Q8NG98 312 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 MAFAQ8NHW3 353 aaPredicted RBP13.09□□□□□ -0.31
CLK3-214ENST00000564096 CSGALNACT1Q8TDX6 532 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 CASKIN2Q8WXE0 1202 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 EXOC4Q96A65 974 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 ASIC4Q96FT7 647 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 ZFYVE19Q96K21 471 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 LRRC3BQ96PB8 259 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 LINC00597Q9H2U6 94 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 BRD9Q9H8M2 597 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 ECT2Q9H8V3 914 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 DNAJC17Q9NVM6 304 aaKnown RBP13.09□□□□□ -0.31
CLK3-214ENST00000564096 GOLGA6AQ9NYA3 693 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 GGA2Q9UJY4 613 aa13.09□□□□□ -0.31
CLK3-214ENST00000564096 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.08□□□□□ -0.32
CLK3-214ENST00000564096 A0A0D9SEW6 157 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 SMAPO00193 183 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 GCATO75600 419 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 PABPC1P11940 636 aaKnown RBP13.08□□□□□ -0.32
CLK3-214ENST00000564096 CCNB1P14635 433 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 PTPN3P26045 913 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 ACVRL1P37023 503 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 FDFT1P37268 417 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 HSPA9P38646 679 aaKnown RBP13.08□□□□□ -0.32
CLK3-214ENST00000564096 EIF2DP41214 584 aaKnown RBP13.08□□□□□ -0.32
CLK3-214ENST00000564096 MMP13P45452 471 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 DGKGP49619 791 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 BASP1P80723 227 aaKnown RBP13.08□□□□□ -0.32
CLK3-214ENST00000564096 SLC7A5Q01650 507 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 CAV1Q03135 178 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 GPS1Q13098 491 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 RUNX3Q13761 415 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 HNRNPDQ14103 355 aaKnown RBP13.08□□□□□ -0.32
CLK3-214ENST00000564096 TRIP13Q15645 432 aaPredicted RBP13.08□□□□□ -0.32
CLK3-214ENST00000564096 AAK1Q2M2I8 961 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 PLEKHG6Q3KR16 790 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 ITPRIPL2Q3MIP1 535 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 PITRM1Q5JRX3 1037 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 MARC1Q5VT66 337 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 GRAMD4Q6IC98 578 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 ARHGAP36Q6ZRI8 547 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 TP53INP2Q8IXH6 220 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.08□□□□□ -0.32
CLK3-214ENST00000564096 WFDC5Q8TCV5 224 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 MAML1Q92585 1016 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 FEM1AQ9BSK4 669 aa13.08□□□□□ -0.32
CLK3-214ENST00000564096 CINPQ9BW66 212 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms