RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 HDAC3O15379 428 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 NOL3O60936 208 aaKnown RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 ERN1O75460 977 aaKnown RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 FLOT1O75955 427 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 TMCC1O94876 653 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 ABLIM3O94929 683 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 ESRRBO95718 433 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 PLGP00747 810 aaPredicted RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 KRT14P02533 472 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 ASGR1P07306 291 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 HEXBP07686 556 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 MYZAPP0CAP1 466 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 POLR2MP0CAP2 368 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 CCDC166P0CW27 439 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 PDHBP11177 359 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 MYCLP12524 364 aaPredicted RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 ACTN1P12814 892 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 HSPA6P17066 643 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 FDXRP22570 491 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 AXLP30530 894 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 RFC4P35249 363 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 CBX5P45973 191 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 MAP3K7CLP57077 242 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 VBP1P61758 197 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 SLFN5Q08AF3 891 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 PPFIA1Q13136 1202 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 IDI1Q13907 227 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 SQLEQ14534 574 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 KCNB1Q14721 858 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 ODF1Q14990 250 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 SPCS2Q15005 226 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 CYP2A13Q16696 494 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 CCDC142Q17RM4 750 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 UAP1L1Q3KQV9 507 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 TDRD12Q587J7 1177 aaKnown RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 TMTC4Q5T4D3 741 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 CYB5RLQ6IPT4 315 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 NEPROQ6NW34 567 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 TMEM154Q6P9G4 183 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 C6orf89Q6UWU4 347 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 LRRC31Q6UY01 552 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 COMTD1Q86VU5 262 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 CD302Q8IX05 232 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 MIER2Q8N344 545 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 MAB21L3Q8N8X9 362 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 AVL9Q8NBF6 648 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 ZBTB44Q8NCP5 570 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 C7orf57Q8NEG2 295 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 OR8K1Q8NGG5 319 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 LILRB4Q8NHJ6 448 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 DEPTORQ8TB45 409 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 DDI1Q8WTU0 396 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 CENPIQ92674 756 aaPredicted RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 ATP2A3Q93084 1043 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 RAB24Q969Q5 203 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 ZNF845Q96IR2 970 aaPredicted RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 VPS50Q96JG6 964 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 CLPTM1LQ96KA5 538 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 NT5C1BQ96P26 610 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 YME1L1Q96TA2 773 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 PRPF18Q99633 342 aaKnown RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 DDX50Q9BQ39 737 aaKnown RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 DDX23Q9BUQ8 820 aaKnown RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 NUSAP1Q9BXS6 441 aaKnown RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 MTMR12Q9C0I1 747 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 DRC3Q9H069 523 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 DENND2DQ9H6A0 471 aaPredicted RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 UCK1Q9HA47 277 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 SCPEP1Q9HB40 452 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 FARSBQ9NSD9 589 aaKnown RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 EHD3Q9NZN3 535 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 JKAMPQ9P055 326 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 TESQ9UGI8 421 aaKnown RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 FBXO40Q9UH90 709 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 BAG5Q9UL15 447 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 C19orf53Q9UNZ5 99 aaPredicted RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 EXOC7Q9UPT5 735 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 EXOC6BQ9Y2D4 811 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 PCDHB1Q9Y5F3 818 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 BZW2Q9Y6E2 419 aaKnown RBP5.31□□□□□ -1.56
VPS35-205ENST00000563984 SESN1Q9Y6P5 492 aa5.31□□□□□ -1.56
VPS35-205ENST00000563984 TNIKQ9UKE5 1360 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 KIF7Q2M1P5 1343 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 FRMPD2Q68DX3 1309 aaPredicted RBP5.3□□□□□ -1.56
VPS35-205ENST00000563984 AP3D1O14617 1153 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 BIRC5O15392 142 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 MAGEB3O15480 346 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 CTIFO43310 598 aaKnown RBP5.3□□□□□ -1.56
VPS35-205ENST00000563984 SRGAP2O75044 1071 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 NIPSNAP2O75323 286 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 GUCY1B2O75343 617 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 SLC43A1O75387 559 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 SLC22A3O75751 556 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 RNF8O76064 485 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 PRKAR1AP10644 381 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 FBLP22087 321 aaKnown RBP5.3□□□□□ -1.56
VPS35-205ENST00000563984 KELP23276 732 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 GDI1P31150 447 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 MLH1P40692 756 aa5.3□□□□□ -1.56
VPS35-205ENST00000563984 RECQLP46063 649 aaPredicted RBP5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms