RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 SERGEFQ9UGK8 458 aa17.28■□□□□ 0.36
CLK3-210ENST00000563112 TPX2Q9ULW0 747 aaKnown RBP17.28■□□□□ 0.36
CLK3-210ENST00000563112 ILVBLA1L0T0 632 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 ANKRD62A6NC57 917 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 MCF2LO15068 1137 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 BNIP3LO60238 219 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 IGHV4-34P06331 123 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 ADRA1BP35368 520 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 PTPN9P43378 593 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 SIM1P81133 766 aaPredicted RBP17.27■□□□□ 0.36
CLK3-210ENST00000563112 HLA-BQ31612 363 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 CCDC14Q49A88 953 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 CAVIN1Q6NZI2 390 aaKnown RBP17.27■□□□□ 0.36
CLK3-210ENST00000563112 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.27■□□□□ 0.36
CLK3-210ENST00000563112 ZNF783Q6ZMS7 281 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 Q6ZVU0 165 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 STRADAQ7RTN6 431 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 AADATQ8N5Z0 425 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 DCAF4L2Q8NA75 395 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 JOSD2Q8TAC2 188 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 HS3ST2Q9Y278 367 aa17.27■□□□□ 0.36
CLK3-210ENST00000563112 TBC1D3DA0A087WVF3 549 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 TBC1D3IA0A087WXS9 549 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 TBC1D3EA0A087X179 549 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 TBC1D3KA0A087X1G2 549 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 SPAARA0A1B0GVQ0 90 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 A0A1W2PPC4 97 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 TBC1D3FA6NER0 549 aaPredicted RBP17.26■□□□□ 0.35
CLK3-210ENST00000563112 C2CD4BA6NLJ0 364 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 TBC1D3LB9A6J9 549 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 SH3BP5O60239 455 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 TBC1D3HP0C7X1 549 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 ZNF883P0CG24 379 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 SRCP12931 536 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 CCR5P51681 352 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 CLCN6P51797 869 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 GSCP56915 257 aaPredicted RBP17.26■□□□□ 0.35
CLK3-210ENST00000563112 C21orf59P57076 290 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 RACK1P63244 317 aaKnown RBP17.26■□□□□ 0.35
CLK3-210ENST00000563112 SUZ12Q15022 739 aaKnown RBP17.26■□□□□ 0.35
CLK3-210ENST00000563112 C15orf59Q2T9L4 293 aaPredicted RBP17.26■□□□□ 0.35
CLK3-210ENST00000563112 KIF19Q2TAC6 998 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 TBC1D3GQ6DHY5 549 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 TBC1D3CQ6IPX1 549 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 RETSATQ6NUM9 610 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 NAXDQ8IW45 347 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 TBC1D3Q8IZP1 549 aaPredicted RBP17.26■□□□□ 0.35
CLK3-210ENST00000563112 C3orf20Q8ND61 904 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 PSMB7Q99436 277 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 SPON2Q9BUD6 331 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 OSBPL2Q9H1P3 480 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 RETREG1Q9H6L5 497 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 TM7SF3Q9NS93 570 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 PPARGC1AQ9UBK2 798 aaKnown RBP17.26■□□□□ 0.35
CLK3-210ENST00000563112 OR12D3Q9UGF7 316 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 VPS51Q9UID3 782 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 MYO6Q9UM54 1294 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 ANKRD6Q9Y2G4 727 aa17.26■□□□□ 0.35
CLK3-210ENST00000563112 NYNRINQ9P2P1 1898 aaKnown RBP17.26■□□□□ 0.35
CLK3-210ENST00000563112 A0A0D9SEW6 157 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 SLC7A4O43246 635 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 SNAP91O60641 907 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 DESP17661 470 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 TNFAIP3P21580 790 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 GPD1P21695 349 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 RFC1P35251 1148 aaPredicted RBP17.25■□□□□ 0.35
CLK3-210ENST00000563112 RECQLP46063 649 aaPredicted RBP17.25■□□□□ 0.35
CLK3-210ENST00000563112 ZNF165P49910 485 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 ADPRHP54922 357 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 BNC1Q01954 994 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 NRG1Q02297 640 aaPredicted RBP17.25■□□□□ 0.35
CLK3-210ENST00000563112 C1QBPQ07021 282 aaKnown RBP17.25■□□□□ 0.35
CLK3-210ENST00000563112 SLC20A2Q08357 652 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 CCDC15Q0P6D6 951 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 PTP4A2Q12974 167 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 TRIP6Q15654 476 aaKnown RBP17.25■□□□□ 0.35
CLK3-210ENST00000563112 RWDD4Q6NW29 188 aaKnown RBP17.25■□□□□ 0.35
CLK3-210ENST00000563112 PPP1R2P3Q6NXS1 205 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 PIP4K2CQ8TBX8 421 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 SETD7Q8WTS6 366 aaKnown RBP17.25■□□□□ 0.35
CLK3-210ENST00000563112 FAM172AQ8WUF8 416 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 ACE2Q9BYF1 805 aaPredicted RBP17.25■□□□□ 0.35
CLK3-210ENST00000563112 KDM4CQ9H3R0 1056 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 IL21RQ9HBE5 538 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 ATP13A1Q9HD20 1204 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 RTN4Q9NQC3 1192 aaKnown RBP17.25■□□□□ 0.35
CLK3-210ENST00000563112 PPM1HQ9ULR3 514 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 PCDHGB2Q9Y5G2 931 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 SNX11Q9Y5W9 270 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 SLCO1B1Q9Y6L6 691 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 DOCK4Q8N1I0 1966 aa17.25■□□□□ 0.35
CLK3-210ENST00000563112 CABIN1Q9Y6J0 2220 aa17.24■□□□□ 0.35
CLK3-210ENST00000563112 SIGLEC16A6NMB1 481 aa17.24■□□□□ 0.35
CLK3-210ENST00000563112 CBX4O00257 560 aa17.24■□□□□ 0.35
CLK3-210ENST00000563112 TEX33O43247 280 aa17.24■□□□□ 0.35
CLK3-210ENST00000563112 GJB6O95452 261 aa17.24■□□□□ 0.35
CLK3-210ENST00000563112 MT-CO1P00395 513 aa17.24■□□□□ 0.35
CLK3-210ENST00000563112 DRD3P35462 400 aa17.24■□□□□ 0.35
CLK3-210ENST00000563112 ETFBP38117 255 aa17.24■□□□□ 0.35
CLK3-210ENST00000563112 GNA12Q03113 381 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms