RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CCL23P55773 120 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 GPX6P59796 221 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 SLC18A2Q05940 514 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 DUSP4Q13115 394 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 CRYMQ14894 314 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 GPNMBQ14956 572 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 POLD3Q15054 466 aaPredicted RBP7.67□□□□□ -1.18
VPS39-204ENST00000561818 DDR2Q16832 855 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 CCDC153Q494R4 210 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 MS4A13Q5J8X5 152 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 PCID2Q5JVF3 399 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 RTP2Q5QGT7 225 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 ANKRD22Q5VYY1 191 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 KCTD11Q693B1 232 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 DEFB128Q7Z7B8 93 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 ANKMY2Q8IV38 441 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 PYROXD2Q8N2H3 581 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 TMEM130Q8N3G9 435 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 ATAD1Q8NBU5 361 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 ADAM32Q8TC27 787 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 ZNF473Q8WTR7 871 aaKnown RBP7.67□□□□□ -1.18
VPS39-204ENST00000561818 SPOCK2Q92563 424 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 MRPS31Q92665 395 aaKnown RBP7.67□□□□□ -1.18
VPS39-204ENST00000561818 PSMG2Q969U7 264 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 CERS2Q96G23 380 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 SIGLEC10Q96LC7 697 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 RPRD1AQ96P16 312 aaPredicted RBP7.67□□□□□ -1.18
VPS39-204ENST00000561818 TMEM209Q96SK2 561 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 TUBB6Q9BUF5 446 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 PPP1R12CQ9BZL4 782 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 SIK2Q9H0K1 926 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 RASSF4Q9H2L5 321 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 STN1Q9H668 368 aaKnown RBP7.67□□□□□ -1.18
VPS39-204ENST00000561818 RXFP1Q9HBX9 757 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 ARNT2Q9HBZ2 717 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 GLOD4Q9HC38 313 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 TMEM30AQ9NV96 361 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 KLHL14Q9P2G3 628 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 CACNG4Q9UBN1 327 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 SEPT3Q9UH03 358 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 STOML2Q9UJZ1 356 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 GRID1Q9ULK0 1009 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 SOX13Q9UN79 622 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 STARD13Q9Y3M8 1113 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 YIPF1Q9Y548 306 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 IRAK3Q9Y616 596 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 HS3ST4Q9Y661 456 aa7.67□□□□□ -1.18
VPS39-204ENST00000561818 FNDC1Q4ZHG4 1894 aaPredicted RBP7.66□□□□□ -1.18
VPS39-204ENST00000561818 MYO16Q9Y6X6 1858 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.66□□□□□ -1.18
VPS39-204ENST00000561818 A0A1W2PQ67 120 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 ILVBLA1L0T0 632 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 WDR27A2RRH5 827 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 ZNF840PA6NDX5 716 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 GOLGA8CPA6NN73 597 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 DFFAO00273 331 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 TYROBPO43914 113 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 ACSL4O60488 711 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 DCTN3O75935 186 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 TGDSO95455 350 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 LRG1P02750 347 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 MPOP05164 745 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 FGF1P05230 155 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 RB1P06400 928 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 CTSAP10619 480 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 PYGBP11216 843 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 ADRA1DP25100 572 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 SSTR1P30872 391 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 OR1E1P30953 314 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 OR1D2P34982 312 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 CCNFP41002 786 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 GYS2P54840 703 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 ARPP19P56211 112 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 NAA20P61599 178 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 WDR5P61964 334 aaKnown RBP7.66□□□□□ -1.18
VPS39-204ENST00000561818 NSUN2Q08J23 767 aaKnown RBP eCLIP7.66□□□□□ -1.18
VPS39-204ENST00000561818 CCDC15Q0P6D6 951 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 EFEMP1Q12805 493 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 ZNF177Q13360 481 aaPredicted RBP7.66□□□□□ -1.18
VPS39-204ENST00000561818 SERINC3Q13530 473 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 SLC12A1Q13621 1099 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 ZNF235Q14590 738 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 FASTKD3Q14CZ7 662 aaKnown RBP7.66□□□□□ -1.18
VPS39-204ENST00000561818 SETDB1Q15047 1291 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 MTFR1Q15390 333 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 KBTBD12Q3ZCT8 623 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 TAF1BQ53T94 588 aaPredicted RBP7.66□□□□□ -1.18
VPS39-204ENST00000561818 ADGRF1Q5T601 910 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 ALG1LQ6GMV1 187 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 RNF19BQ6ZMZ0 732 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 UNC5AQ6ZN44 842 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 CCDC121Q6ZUS5 278 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 FIBCD1Q8N539 461 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 TEX26Q8N6G2 289 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 OTUD6BQ8N6M0 293 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 EFHBQ8N7U6 833 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 PPM1NQ8N819 430 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 PDCD7Q8N8D1 485 aaKnown RBP7.66□□□□□ -1.18
VPS39-204ENST00000561818 RDH11Q8TC12 318 aa7.66□□□□□ -1.18
VPS39-204ENST00000561818 DCAKDQ8WVC6 231 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms