RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, human

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-231	ENST00000561395	PCDHGA2	Q9Y5H1	932 aa		7.72	□□□□□ -1.17
TPM1-231	ENST00000561395	INSL5	Q9Y5Q6	135 aa		7.72	□□□□□ -1.17
TPM1-231	ENST00000561395	HS3ST4	Q9Y661	456 aa		7.72	□□□□□ -1.17
TPM1-231	ENST00000561395	NYNRIN	Q9P2P1	1898 aa	Known RBP	7.72	□□□□□ -1.17
TPM1-231	ENST00000561395	GCN1	Q92616	2671 aa	Known RBP	7.72	□□□□□ -1.17
TPM1-231	ENST00000561395	IGF2R	P11717	2491 aa		7.71	□□□□□ -1.17
TPM1-231	ENST00000561395	SLC12A8	A0AV02	714 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	C5orf60	A6NFR6	353 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395		E9PAM4	449 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	SMAP	O00193	183 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	NCAM2	O15394	837 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	LAMTOR5	O43504	91 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	TGM5	O43548	720 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	GCAT	O75600	419 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	CXCL14	O95715	111 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	SYF2	O95926	243 aa	Known RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	MOCS2	O96007	188 aa	Predicted RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	CNP	P09543	421 aa	Known RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	NUDT17	P0C025	328 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	TGM1	P22735	817 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	OAS2	P29728	719 aa	Known RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	GBP2	P32456	591 aa	Predicted RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	MAGEA6	P43360	314 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	PPP3CC	P48454	512 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	TUB	P50607	506 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	KPNA1	P52294	538 aa	Predicted RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	PMS2	P54278	862 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	EPHB3	P54753	998 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	MLLT6	P55198	1093 aa	Predicted RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	FAM193A	P78312	1265 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	GALNT2	Q10471	571 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	MTA1	Q13330	715 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	PLD1	Q13393	1074 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	KCNJ11	Q14654	390 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	HECTD3	Q5T447	861 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	ACBD5	Q5T8D3	534 aa	Predicted RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	ANKRD22	Q5VYY1	191 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	DENND2C	Q68D51	928 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	HEATR6	Q6AI08	1181 aa	Known RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	RWDD4	Q6NW29	188 aa	Known RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	KLHDC10	Q6PID8	442 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	C4orf22	Q6V702	233 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	TRMT10C	Q7L0Y3	403 aa	Known RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	C14orf80	Q86SX3	495 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	MIB1	Q86YT6	1006 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	RELL1	Q8IUW5	271 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	ZNF683	Q8IZ20	524 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	CCDC33	Q8N5R6	958 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	ATP6V0D2	Q8N8Y2	350 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	NAT8L	Q8N9F0	302 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	CCDC110	Q8TBZ0	833 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	LRRN4	Q8WUT4	740 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	UBLCP1	Q8WVY7	318 aa	Predicted RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	HTR3C	Q8WXA8	447 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	CPT1B	Q92523	772 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	PSMG2	Q969U7	264 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	BTN2A3P	Q96KV6	586 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	C1orf74	Q96LT6	269 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	ZNF512	Q96ME7	567 aa	Predicted RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	LGMN	Q99538	433 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	PHACTR1	Q9C0D0	580 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	KLC2	Q9H0B6	622 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	BRD8	Q9H0E9	1235 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	PABPC3	Q9H361	631 aa	Known RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	CDC42EP4	Q9H3Q1	356 aa	Known RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	CATSPERB	Q9H7T0	1116 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	SPATA6	Q9NWH7	488 aa	Predicted RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	TRPM5	Q9NZQ8	1165 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	PPARGC1A	Q9UBK2	798 aa	Known RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	UXT	Q9UBK9	157 aa	Predicted RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	SLC12A6	Q9UHW9	1150 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	XPO7	Q9UIA9	1087 aa	Known RBP	7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	DNMT3L	Q9UJW3	386 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	FBXO4	Q9UKT5	387 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	NFS1	Q9Y697	457 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	SHROOM3	Q8TF72	1996 aa		7.71	□□□□□ -1.18
TPM1-231	ENST00000561395	HELZ	P42694	1942 aa	Known RBP	7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	TICRR	Q7Z2Z1	1910 aa		7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	NBEA	Q8NFP9	2946 aa		7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	IGLV3-10	A0A075B6K4	115 aa		7.7	□□□□□ -1.18
TPM1-231	ENST00000561395		A0A0A0MRY4	1105 aa		7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	WASH4P	A8MWX3	477 aa		7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	RNF103	O00237	685 aa		7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	SLC30A4	O14863	429 aa		7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	CHAD	O15335	359 aa		7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	COCH	O43405	550 aa		7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	RRP9	O43818	475 aa	Known RBP	7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	STK10	O94804	968 aa	Known RBP	7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	TMEM63A	O94886	807 aa		7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	OAS1	P00973	400 aa	Known RBP	7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	ADH1A	P07327	375 aa		7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	MX2	P20592	715 aa		7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	ACTN2	P35609	894 aa		7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	ATP5C1	P36542	298 aa	Known RBP	7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	GARS	P41250	739 aa	Known RBP	7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	BASP1	P80723	227 aa	Known RBP	7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	CSTF1	Q05048	431 aa	Known RBP	7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	PPID	Q08752	370 aa	Known RBP	7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	AP1B1	Q10567	949 aa		7.7	□□□□□ -1.18
TPM1-231	ENST00000561395	WASHC5	Q12768	1159 aa		7.7	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms