RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 ARHGAP36Q6ZRI8 547 aa9.83□□□□□ -0.84
CUX1-216ENST00000558469 KIAA0907Q7Z7F0 614 aaPredicted RBP9.83□□□□□ -0.84
CUX1-216ENST00000558469 ATPAF2Q8N5M1 289 aa9.83□□□□□ -0.84
CUX1-216ENST00000558469 ALG14Q96F25 216 aa9.83□□□□□ -0.84
CUX1-216ENST00000558469 LMLNQ96KR4 655 aa9.83□□□□□ -0.84
CUX1-216ENST00000558469 OLFM3Q96PB7 478 aa9.83□□□□□ -0.84
CUX1-216ENST00000558469 PNKPQ96T60 521 aa9.83□□□□□ -0.84
CUX1-216ENST00000558469 LGMNQ99538 433 aa9.83□□□□□ -0.84
CUX1-216ENST00000558469 P2RY13Q9BPV8 354 aa9.83□□□□□ -0.84
CUX1-216ENST00000558469 C8orf33Q9H7E9 229 aaPredicted RBP9.83□□□□□ -0.84
CUX1-216ENST00000558469 HOMER3Q9NSC5 361 aa9.83□□□□□ -0.84
CUX1-216ENST00000558469 INTS6Q9UL03 887 aaKnown RBP9.83□□□□□ -0.84
CUX1-216ENST00000558469 SLC27A6Q9Y2P4 619 aa9.83□□□□□ -0.84
CUX1-216ENST00000558469 OR51B4Q9Y5P0 310 aa9.83□□□□□ -0.84
CUX1-216ENST00000558469 MRFAP1Q9Y605 127 aa9.83□□□□□ -0.84
CUX1-216ENST00000558469 TRIOO75962 3097 aa9.83□□□□□ -0.84
CUX1-216ENST00000558469 GOLGA6L10A0A0M3HER8 536 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 J3KR12 359 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 PPP1R12AO14974 1030 aaPredicted RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 MCF2LO15068 1137 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 KDELR3O43731 214 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 LIASO43766 372 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 SNAP91O60641 907 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 MAFKO60675 156 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 KAT7O95251 611 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 APODP05090 189 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 RBP3P10745 1247 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 POLR2EP19388 210 aaKnown RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 MX2P20592 715 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 CCNCP24863 283 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 EIF2DP41214 584 aaKnown RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 CKAP4Q07065 602 aaKnown RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 PPIDQ08752 370 aaKnown RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 XRCC4Q13426 336 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 BYSLQ13895 437 aaKnown RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 DMC1Q14565 340 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 CCNG2Q16589 344 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 GEN1Q17RS7 908 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 PREPLQ4J6C6 727 aaPredicted RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 TMEM215Q68D42 235 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 MBLAC2Q68D91 279 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 DARS2Q6PI48 645 aaKnown RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 TXNDC11Q6PKC3 985 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 LEKR1Q6ZMV7 388 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 ADIPOR2Q86V24 386 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 RALGPS2Q86X27 583 aaPredicted RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 LRRC49Q8IUZ0 686 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.82□□□□□ -0.84
CUX1-216ENST00000558469 GJD3Q8N144 294 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 AHI1Q8N157 1196 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 PHTF2Q8N3S3 785 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.82□□□□□ -0.84
CUX1-216ENST00000558469 PRELID2Q8N945 189 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 TFB1MQ8WVM0 346 aaKnown RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 NECAB3Q96P71 396 aaPredicted RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 C2orf49Q9BVC5 232 aaPredicted RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 ACE2Q9BYF1 805 aaPredicted RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 FRMD8P1Q9BZ68 369 aaPredicted RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 CIPCQ9C0C6 399 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 C10orf88Q9H8K7 445 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 SP110Q9HB58 689 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 FBRSL1Q9HCM7 1045 aaKnown RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 CD320Q9NPF0 282 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 IPO11Q9UI26 975 aaKnown RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 FBXL21Q9UKT6 434 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 DNPEPQ9ULA0 475 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 CA14Q9ULX7 337 aa9.82□□□□□ -0.84
CUX1-216ENST00000558469 MUC22E2RYF6 1773 aaPredicted RBP9.82□□□□□ -0.84
CUX1-216ENST00000558469 TBC1D3BA6NDS4 549 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 HACD1B0YJ81 288 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 PRRT4C9JH25 899 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 PRAMEF11O60813 436 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 PHF2O75151 1096 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 HOXB1P14653 301 aaPredicted RBP9.81□□□□□ -0.84
CUX1-216ENST00000558469 GLULP15104 373 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 GRIA2P42262 883 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 CTSOP43234 321 aaPredicted RBP9.81□□□□□ -0.84
CUX1-216ENST00000558469 ECT2LQ008S8 904 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 IL10RBQ08334 325 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 PRKD1Q15139 912 aaPredicted RBP9.81□□□□□ -0.84
CUX1-216ENST00000558469 PON2Q15165 354 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 MLF2Q15773 248 aaPredicted RBP9.81□□□□□ -0.84
CUX1-216ENST00000558469 SLC45A4Q5BKX6 768 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 TJAP1Q5JTD0 557 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 LINGO4Q6UY18 593 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 TPRG1Q6ZUI0 275 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 NUDT18Q6ZVK8 323 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 CDKL3Q8IVW4 592 aaPredicted RBP9.81□□□□□ -0.84
CUX1-216ENST00000558469 SFTPA1Q8IWL2 248 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 KLHL7Q8IXQ5 586 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 CCDC13Q8IYE1 715 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 UBALD2Q8IYN6 164 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 TERB1Q8NA31 727 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 DCAF4L2Q8NA75 395 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 SLC35B2Q8TB61 432 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 WFIKKN2Q8TEU8 576 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 SORCS1Q8WY21 1168 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 EXOC4Q96A65 974 aa9.81□□□□□ -0.84
CUX1-216ENST00000558469 MAGOHBQ96A72 148 aaKnown RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms