RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 OMDQ99983 421 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 RCOR3Q9P2K3 495 aaPredicted RBP13.15□□□□□ -0.31
LDLR-207ENST00000558013 STAP1Q9ULZ2 295 aa13.15□□□□□ -0.31
LDLR-207ENST00000558013 LYNP07948 512 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 CYP2B6P20813 491 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 GABRB3P28472 473 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 TBL3Q12788 808 aaKnown RBP13.14□□□□□ -0.31
LDLR-207ENST00000558013 CFAP157Q5JU67 520 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 SPANXN3Q5MJ09 141 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 KCTD11Q693B1 232 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 PGM2L1Q6PCE3 622 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 CNTD1Q8N815 330 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 BRI3BPQ8WY22 251 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 VPS39Q96JC1 886 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 FTHL17Q9BXU8 183 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 ATXN3LQ9H3M9 355 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 NMRAL1Q9HBL8 299 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 ASB3Q9Y575 518 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 PCDHB12Q9Y5F1 795 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 GNAT1P11488 350 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 COX4I1P13073 169 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 SERPINB6P35237 376 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 SPRP35270 261 aaPredicted RBP13.14□□□□□ -0.31
LDLR-207ENST00000558013 AQP4P55087 323 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 SEMA3BQ13214 749 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 CTBP1Q13363 440 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 MPP3Q13368 585 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 TBCCQ15814 346 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 SV2CQ496J9 727 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 OLFML2BQ68BL8 750 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 EPGNQ6UW88 154 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 DENND6AQ8IWF6 608 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 TMEM151AQ8N4L1 468 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 TDRD5Q8NAT2 981 aaKnown RBP13.14□□□□□ -0.31
LDLR-207ENST00000558013 MS4A4AQ96JQ5 239 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 NUF2Q9BZD4 464 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 TKTL2Q9H0I9 626 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 SIK2Q9H0K1 926 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 CDH19Q9H159 772 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 DNAJC28Q9NX36 388 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 MIOSQ9NXC5 875 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 OR12D3Q9UGF7 316 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 DOCK3Q8IZD9 2030 aa13.14□□□□□ -0.31
LDLR-207ENST00000558013 CCL15-CCL14A0A0B4J2E2 113 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 TMEM233B4DJY2 109 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 LRIG2O94898 1065 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 FAM200BP0CF97 657 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 HOXD8P13378 290 aaPredicted RBP13.13□□□□□ -0.31
LDLR-207ENST00000558013 KCNE1P15382 129 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 YBX3P16989 372 aaKnown RBP eCLIP13.13□□□□□ -0.313e-9■□□□□ 8.2
LDLR-207ENST00000558013 SERPINB8P50452 374 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 CLCNKBP51801 687 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 NAGLUP54802 743 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 DAOAP59103 153 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 KLF10Q13118 480 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 MSLNQ13421 630 aaPredicted RBP13.13□□□□□ -0.31
LDLR-207ENST00000558013 CCL15Q16663 113 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 TMCO4Q5TGY1 634 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 KCTD4Q8WVF5 259 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 TSC22D3Q99576 134 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 NAT9Q9BTE0 207 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 COLEC11Q9BWP8 271 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 TASP1Q9H6P5 420 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 CASS4Q9NQ75 786 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 FBXW11Q9UKB1 542 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 MAGEA12P43365 314 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 DLG1Q12959 904 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 POU6F1Q14863 301 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 INSCQ1MX18 579 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 DHDDSQ86SQ9 333 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 CLEC14AQ86T13 490 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 ZSCAN18Q8TBC5 510 aaPredicted RBP13.13□□□□□ -0.31
LDLR-207ENST00000558013 SGF29Q96ES7 293 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 SENP8Q96LD8 212 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 GAD1Q99259 594 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 ABHD16BQ9H3Z7 469 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 FLRT1Q9NZU1 646 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 NUDT5Q9UKK9 219 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 SSX2IPQ9Y2D8 614 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 SBF1O95248 1867 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 MBLAC1A4D2B0 266 aaPredicted RBP13.13□□□□□ -0.31
LDLR-207ENST00000558013 STX16-NPEPL1H3BU86 382 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 CCNT2O60583 730 aaKnown RBP13.13□□□□□ -0.31
LDLR-207ENST00000558013 F2P00734 622 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 RAG1P15918 1043 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 ALOX15P16050 662 aaPredicted RBP13.13□□□□□ -0.31
LDLR-207ENST00000558013 WARSP23381 471 aaKnown RBP13.13□□□□□ -0.31
LDLR-207ENST00000558013 CRABP2P29373 138 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 GARSP41250 739 aaKnown RBP13.13□□□□□ -0.31
LDLR-207ENST00000558013 PGFP49763 221 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 MPP1Q00013 466 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 PPIDQ08752 370 aaKnown RBP13.13□□□□□ -0.31
LDLR-207ENST00000558013 ARL13AQ5H913 290 aaPredicted RBP13.13□□□□□ -0.31
LDLR-207ENST00000558013 RWDD4Q6NW29 188 aaKnown RBP13.13□□□□□ -0.31
LDLR-207ENST00000558013 RPS27LQ71UM5 84 aaKnown RBP13.13□□□□□ -0.31
LDLR-207ENST00000558013 MFSD6LQ8IWD5 586 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 ACTRT2Q8TDY3 377 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 VCXQ9H320 206 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 SLC2A6Q9UGQ3 507 aa13.13□□□□□ -0.31
LDLR-207ENST00000558013 ZDHHC2Q9UIJ5 367 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms