RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 DENND1AQ8TEH3 1009 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 FBXO32Q969P5 355 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 RRN3Q9NYV6 651 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 NEU3Q9UQ49 428 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 HS3ST4Q9Y661 456 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 ARHGEF37A1IGU5 675 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 GOLGA8TH3BQL2 631 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 UNC5CO95185 931 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 CSPG5O95196 566 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 KLC1Q07866 573 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 CERCAMQ5T4B2 595 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 ZNF280DQ6N043 979 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 ZNF784Q8NCA9 323 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-212ENST00000554467 PHACTR1Q9C0D0 580 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 SMOC2Q9H3U7 446 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 XAB2Q9HCS7 855 aaKnown RBP11.93□□□□□ -0.5
SHMT2-212ENST00000554467 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-212ENST00000554467 ACTL7BQ9Y614 415 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 PSAT1Q9Y617 370 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 H0Y3Z8 333 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 MT-CYBP00156 380 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-212ENST00000554467 ERVK-10P10266 1014 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 ACADSP16219 412 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 FDFT1P37268 417 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 IL9RQ01113 521 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 PPIDQ08752 370 aaKnown RBP11.93□□□□□ -0.5
SHMT2-212ENST00000554467 NR1H3Q13133 447 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 NFE2Q16621 373 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-212ENST00000554467 PARP6Q2NL67 630 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 RASIP1Q5U651 963 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 PIK3R6Q5UE93 754 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 CDHR3Q6ZTQ4 885 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 PDZD4Q76G19 769 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-212ENST00000554467 FAM13CQ8NE31 585 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 ARNTL2Q8WYA1 636 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 PLEKHG4BQ96PX9 1271 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 FAM111AQ96PZ2 611 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 FERMT1Q9BQL6 677 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 MLPHQ9BV36 600 aaPredicted RBP11.93□□□□□ -0.5
SHMT2-212ENST00000554467 SLC39A8Q9C0K1 460 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 ATXN3LQ9H3M9 355 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 PNPLA8Q9NP80 782 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.93□□□□□ -0.56e-6■■□□□ 12.1
SHMT2-212ENST00000554467 DCTN4Q9UJW0 460 aa11.93□□□□□ -0.5
SHMT2-212ENST00000554467 UNC80Q8N2C7 3258 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 TTC24A2A3L6 582 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-212ENST00000554467 MTMR11A4FU01 709 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 ARHGAP42A6NI28 874 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 SCAMP3O14828 347 aaKnown RBP11.92□□□□□ -0.5
SHMT2-212ENST00000554467 IMPDH2P12268 514 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 TARSP26639 723 aaKnown RBP11.92□□□□□ -0.5
SHMT2-212ENST00000554467 IRX4P78413 519 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 C10orf120Q5SQS8 335 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 SLC26A11Q86WA9 606 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 CCNJLQ8IV13 435 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 CNTD1Q8N815 330 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 TTC16Q8NEE8 873 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 GSDMBQ8TAX9 411 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 ERP27Q96DN0 273 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 CCSER2Q9H7U1 834 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 ARHGEF38Q9NXL2 777 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 ATP11BQ9Y2G3 1177 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 PCDHGA4Q9Y5G9 962 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 SF3B1O75533 1304 aaKnown RBP eCLIP11.92□□□□□ -0.55e-8■■■■■ 37.4
SHMT2-212ENST00000554467 SDR42E2A6NKP2 422 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 E9PAM4 449 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 TMEM189-UBE2V1I3L0A0 370 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 LPXNO60711 386 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 ENTPD5O75356 428 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 CNTN5O94779 1100 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 AIF1P55008 147 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 GALNT2Q10471 571 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 OVGP1Q12889 678 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 MYBPC3Q14896 1274 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 ZNF354CQ86Y25 554 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 NPAS4Q8IUM7 802 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 LMNTD2Q8IXW0 634 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 ENDOVQ8N8Q3 282 aaKnown RBP11.92□□□□□ -0.5
SHMT2-212ENST00000554467 OXNAD1Q96HP4 312 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-212ENST00000554467 MAGEB18Q96M61 343 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 ARL2BPQ9Y2Y0 163 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 PCDHA11Q9Y5I1 949 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 IQANK1A0A1B0GTG1 560 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 PRPF4O43172 522 aaKnown RBP eCLIP11.92□□□□□ -0.51e-8■■■□□ 17.5
SHMT2-212ENST00000554467 SPATA31D3P0C874 917 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 ERFP50548 548 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 EIF4EBP2Q13542 120 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-212ENST00000554467 LRRC23Q53EV4 343 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-212ENST00000554467 SPATA31D4Q6ZUB0 917 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 MON1AQ86VX9 555 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 ARHGAP12Q8IWW6 846 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.92□□□□□ -0.52e-6■■■■■ 41.4
SHMT2-212ENST00000554467 ATPAF2Q8N5M1 289 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 GBP7Q8N8V2 638 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-212ENST00000554467 BANPQ8N9N5 519 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 NRG4Q8WWG1 115 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 AZIN2Q96A70 460 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 TTC17Q96AE7 1141 aa11.92□□□□□ -0.5
SHMT2-212ENST00000554467 PAK6Q9NQU5 681 aaPredicted RBP11.92□□□□□ -0.5
SHMT2-212ENST00000554467 DNAAF2Q9NVR5 837 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms