RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 ZSCAN16Q9H4T2 348 aaPredicted RBP10.85□□□□□ -0.67
VPS29-208ENST00000550267 CAAP1Q9H8G2 361 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 ABCC13Q9NSE7 274 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 UCKL1Q9NWZ5 548 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 CYTH4Q9UIA0 394 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 SLCO3A1Q9UIG8 710 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 TSPAN16Q9UKR8 245 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 TPX2Q9ULW0 747 aaKnown RBP10.85□□□□□ -0.67
VPS29-208ENST00000550267 CA5BQ9Y2D0 317 aa10.85□□□□□ -0.67
VPS29-208ENST00000550267 ITIH6Q6UXX5 1313 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 CABIN1Q9Y6J0 2220 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 A0A1B0GVM2 712 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 FFAR2O15552 330 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 IRAK2O43187 625 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 CALUO43852 315 aaPredicted RBP10.84□□□□□ -0.67
VPS29-208ENST00000550267 OPA1O60313 960 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 MAGEC1O60732 1142 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 CSO75390 466 aaKnown RBP10.84□□□□□ -0.67
VPS29-208ENST00000550267 IL1BP01584 269 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 SRPRAP08240 638 aaKnown RBP10.84□□□□□ -0.67
VPS29-208ENST00000550267 FBXO45P0C2W1 286 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 MYF5P13349 255 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 VAV1P15498 845 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 DGKAP23743 735 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 MZF1P28698 734 aaPredicted RBP10.84□□□□□ -0.67
VPS29-208ENST00000550267 LSSP48449 732 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 SLC11A2P49281 568 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 NUMBP49757 651 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 STK19P49842 368 aaPredicted RBP10.84□□□□□ -0.67
VPS29-208ENST00000550267 DAOAP59103 153 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 MCCD1P59942 119 aaPredicted RBP10.84□□□□□ -0.67
VPS29-208ENST00000550267 ERVPABLB-1P60509 514 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 RPS24P62847 133 aaKnown RBP10.84□□□□□ -0.67
VPS29-208ENST00000550267 STAT4Q14765 748 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 POM121L1PQ3SYA9 428 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 KIAA1614Q5VZ46 1190 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 MSANTD2Q6P1R3 559 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 IQCHQ86VS3 1027 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 SIX6OS1Q8N1H7 587 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 CFAP52Q8N1V2 620 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 OR4C6Q8NH72 309 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 UBA3Q8TBC4 463 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 SEMA4DQ92854 862 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 PTPRN2Q92932 1015 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 MED8Q96G25 268 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 RPL10LQ96L21 214 aaKnown RBP10.84□□□□□ -0.67
VPS29-208ENST00000550267 DEPDC7Q96QD5 511 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 DPH1Q9BZG8 443 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 POLR1BQ9H9Y6 1135 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 TMEM8AQ9HCN3 771 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 ASCL3Q9NQ33 180 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 EXOC1Q9NV70 894 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 MAST4O15021 2626 aa10.84□□□□□ -0.67
VPS29-208ENST00000550267 PIK3R2O00459 728 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 MAPK13O15264 365 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 RTN2O75298 545 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 YEATS4O95619 227 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 ITGB2P05107 769 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 GIMD1P0DJR0 217 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 LCP1P13796 627 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 MX2P20592 715 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 NR2F2P24468 414 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 TBX4P57082 545 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 ECT2LQ008S8 904 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 BST2Q10589 180 aaKnown RBP10.83□□□□□ -0.68
VPS29-208ENST00000550267 OVGP1Q12889 678 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 CDH18Q13634 790 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 HS1BP3Q53T59 392 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 RNF219Q5W0B1 726 aaPredicted RBP10.83□□□□□ -0.68
VPS29-208ENST00000550267 NUGGCQ68CJ6 796 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 INTS8Q75QN2 995 aaKnown RBP10.83□□□□□ -0.68
VPS29-208ENST00000550267 UNC45BQ8IWX7 931 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 FAM186BQ8IYM0 893 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 APCDD1Q8J025 514 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 TTC39CQ8N584 583 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 SNRNP27Q8WVK2 155 aaKnown RBP10.83□□□□□ -0.68
VPS29-208ENST00000550267 MYOCQ99972 504 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 SPOCK3Q9BQ16 436 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 NUCKS1Q9H1E3 243 aaKnown RBP10.83□□□□□ -0.68
VPS29-208ENST00000550267 OSBPL2Q9H1P3 480 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 HESX1Q9UBX0 185 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 SERTAD1Q9UHV2 236 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 DMTF1Q9Y222 760 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 TRAF3IP3Q9Y228 551 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 CEP83Q9Y592 693 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 ATMQ13315 3056 aa10.83□□□□□ -0.68
VPS29-208ENST00000550267 TYW5A2RUC4 315 aaKnown RBP10.82□□□□□ -0.68
VPS29-208ENST00000550267 PRAMEF26H0Y7S4 382 aa10.82□□□□□ -0.68
VPS29-208ENST00000550267 PLRG1O43660 514 aaKnown RBP10.82□□□□□ -0.68
VPS29-208ENST00000550267 LUC7L3O95232 432 aaKnown RBP10.82□□□□□ -0.68
VPS29-208ENST00000550267 MOCS3O95396 460 aa10.82□□□□□ -0.68
VPS29-208ENST00000550267 CKMT1AP12532 417 aa10.82□□□□□ -0.68
VPS29-208ENST00000550267 KRT13P13646 458 aa10.82□□□□□ -0.68
VPS29-208ENST00000550267 RGS7P49802 495 aa10.82□□□□□ -0.68
VPS29-208ENST00000550267 ELAVL3Q14576 367 aaKnown RBP10.82□□□□□ -0.68
VPS29-208ENST00000550267 SGO2Q562F6 1265 aa10.82□□□□□ -0.68
VPS29-208ENST00000550267 DCAF6Q58WW2 860 aa10.82□□□□□ -0.68
VPS29-208ENST00000550267 MS4A13Q5J8X5 152 aa10.82□□□□□ -0.68
VPS29-208ENST00000550267 KRT39Q6A163 491 aa10.82□□□□□ -0.68
VPS29-208ENST00000550267 CCDC117Q8IWD4 279 aaPredicted RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms