RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 KLF10Q13118 480 aa13□□□□□ -0.33
PTCH1-212ENST00000546744 MTX3Q5HYI7 312 aa13□□□□□ -0.33
PTCH1-212ENST00000546744 INTS11Q5TA45 600 aaKnown RBP13□□□□□ -0.33
PTCH1-212ENST00000546744 LIPMQ5VYY2 423 aa13□□□□□ -0.33
PTCH1-212ENST00000546744 ANO7Q6IWH7 933 aa13□□□□□ -0.33
PTCH1-212ENST00000546744 PLET1Q6UQ28 207 aa13□□□□□ -0.33
PTCH1-212ENST00000546744 C3orf67Q6ZVT6 689 aa13□□□□□ -0.33
PTCH1-212ENST00000546744 FGD2Q7Z6J4 655 aa13□□□□□ -0.33
PTCH1-212ENST00000546744 SIX5Q8N196 739 aa13□□□□□ -0.33
PTCH1-212ENST00000546744 RXFP2Q8WXD0 754 aa13□□□□□ -0.33
PTCH1-212ENST00000546744 TMCO6Q96DC7 493 aa13□□□□□ -0.33
PTCH1-212ENST00000546744 SLITRK1Q96PX8 696 aa13□□□□□ -0.33
PTCH1-212ENST00000546744 SPON2Q9BUD6 331 aa13□□□□□ -0.33
PTCH1-212ENST00000546744 ANKHQ9HCJ1 492 aa13□□□□□ -0.33
PTCH1-212ENST00000546744 TRIM39Q9HCM9 518 aa13□□□□□ -0.33
PTCH1-212ENST00000546744 A0A0B4J269 797 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 LINC00854A0A1B0GVQ3 168 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 RGL2O15211 777 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 PABPC1P11940 636 aaKnown RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 CHRM3P20309 590 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 GLRBP48167 497 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 CDC42P60953 191 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 HPCAP84074 193 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 CSHL1Q14406 222 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 BNIPLQ7Z465 357 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 NOP9Q86U38 636 aaKnown RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 SLCO6A1Q86UG4 719 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 CAMKK2Q96RR4 588 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 SENP6Q9GZR1 1112 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 KCNH7Q9NS40 1196 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 CISHQ9NSE2 258 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 PLLPQ9Y342 182 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 PCDHA11Q9Y5I1 949 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 TNPO3Q9Y5L0 923 aaKnown RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 CRYBG1Q9Y4K1 1723 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 COL22A1Q8NFW1 1626 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 VAPBO95292 243 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 CRTAMO95727 393 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 DHFRP00374 187 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 MLNP12872 115 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 CYP2F1P24903 491 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 BCAP31P51572 246 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 ACLYP53396 1101 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 EN1Q05925 392 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 PSMD5Q16401 504 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 RNF219Q5W0B1 726 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 ADGRD1Q6QNK2 874 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 PHF13Q86YI8 300 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 ZNF317Q96PQ6 595 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 MTMR9Q96QG7 549 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 EBNA1BP2Q99848 306 aaKnown RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 TTYH3Q9C0H2 523 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 CDH19Q9H159 772 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 SEMA6AQ9H2E6 1030 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 XPNPEP3Q9NQH7 507 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 TBC1D30Q9Y2I9 924 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 PEX16Q9Y5Y5 336 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 DOT1LQ8TEK3 1739 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 TRIM43BA6NCK2 446 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 LOC110117498-PIK3R3F6TDL0 507 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 ZBTB11O95625 1053 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 NPTX2P47972 431 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 IRF2BP1Q8IU81 584 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 RNF148Q8N7C7 305 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 PIK3R3Q92569 461 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 RHOBTB2Q9BYZ6 727 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 ENTPD7Q9NQZ7 604 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 LMCD1Q9NZU5 365 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 DAGLAQ9Y4D2 1042 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 FARP1Q9Y4F1 1045 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 NR3C2P08235 984 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 KDELR1P24390 212 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 TGFBR2P37173 567 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 CCNYL2Q5T2Q4 361 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 TWF2Q6IBS0 349 aaKnown RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 CRTC3Q6UUV7 619 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 THAP5Q7Z6K1 395 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 FAM228AQ86W67 206 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 C12orf56Q8IXR9 622 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 NKD2Q969F2 451 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 TARS2Q9BW92 718 aaKnown RBP12.99□□□□□ -0.33
PTCH1-212ENST00000546744 ETNK2Q9NVF9 386 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 MORF4L1Q9UBU8 362 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 CHKBQ9Y259 395 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 LAMB4A4D0S4 1761 aa12.99□□□□□ -0.33
PTCH1-212ENST00000546744 IRGMA1A4Y4 181 aa12.98□□□□□ -0.33
PTCH1-212ENST00000546744 SNAPC5O75971 98 aa12.98□□□□□ -0.33
PTCH1-212ENST00000546744 IFNGR2P38484 337 aa12.98□□□□□ -0.33
PTCH1-212ENST00000546744 ZNF829Q3KNS6 432 aaPredicted RBP12.98□□□□□ -0.33
PTCH1-212ENST00000546744 DCAF4L1Q3SXM0 396 aa12.98□□□□□ -0.33
PTCH1-212ENST00000546744 SCN4BQ8IWT1 228 aa12.98□□□□□ -0.33
PTCH1-212ENST00000546744 MYO1HQ8N1T3 1032 aa12.98□□□□□ -0.33
PTCH1-212ENST00000546744 FBXO39Q8N4B4 442 aa12.98□□□□□ -0.33
PTCH1-212ENST00000546744 LRRC57Q8N9N7 239 aa12.98□□□□□ -0.33
PTCH1-212ENST00000546744 LNX1Q8TBB1 728 aaPredicted RBP12.98□□□□□ -0.33
PTCH1-212ENST00000546744 ZSCAN18Q8TBC5 510 aaPredicted RBP12.98□□□□□ -0.33
PTCH1-212ENST00000546744 FIG4Q92562 907 aa12.98□□□□□ -0.33
PTCH1-212ENST00000546744 FCGR1BQ92637 280 aa12.98□□□□□ -0.33
PTCH1-212ENST00000546744 MLPHQ9BV36 600 aaPredicted RBP12.98□□□□□ -0.33
PTCH1-212ENST00000546744 EPB41L1Q9H4G0 881 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms