RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 GSRP00390 522 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 SERPINA6P08185 405 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 MYL2P10916 166 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 IBSPP21815 317 aaPredicted RBP10.06□□□□□ -0.8
SS18-205ENST00000542420 HARS2P49590 506 aaKnown RBP10.06□□□□□ -0.8
SS18-205ENST00000542420 NDST2P52849 883 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 ZBTB16Q05516 673 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 MTM1Q13496 603 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 BMPR2Q13873 1038 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 PDE1CQ14123 709 aaPredicted RBP10.06□□□□□ -0.8
SS18-205ENST00000542420 PCID2Q5JVF3 399 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 SYCP2LQ5T4T6 812 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 TEDDM1Q5T9Z0 273 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 SLC24A5Q71RS6 500 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 GALNT7Q86SF2 657 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 CLEC14AQ86T13 490 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 MON1AQ86VX9 555 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 CEP57Q86XR8 500 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 ATPAF2Q8N5M1 289 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 SLC43A3Q8NBI5 491 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 OR52K1Q8NGK4 314 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 OR10T2Q8NGX3 314 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 TBC1D10AQ9BXI6 508 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 TRPV6Q9H1D0 765 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 EMCNQ9ULC0 261 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 TLR6Q9Y2C9 796 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 VWA8A3KMH1 1905 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 SYNJ2BP-COX16A0A087WUM0 186 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 OR6C75A6NL08 312 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 GNRH1P01148 92 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 NFKB1P19838 968 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 TARSP26639 723 aaKnown RBP10.06□□□□□ -0.8
SS18-205ENST00000542420 SLC5A3P53794 718 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 PDE1BQ01064 536 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 ZBTB17Q13105 803 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 ITGA7Q13683 1181 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 ACCSLQ4AC99 568 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 FASTKD1Q53R41 847 aaKnown RBP10.06□□□□□ -0.8
SS18-205ENST00000542420 ARHGAP12Q8IWW6 846 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 RTL3Q8N8U3 475 aaKnown RBP10.06□□□□□ -0.8
SS18-205ENST00000542420 PIWIL2Q8TC59 973 aaKnown RBP10.06□□□□□ -0.8
SS18-205ENST00000542420 C2orf15Q8WU43 125 aaKnown RBP10.06□□□□□ -0.8
SS18-205ENST00000542420 RNF34Q969K3 372 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 UTP4Q969X6 686 aaKnown RBP10.06□□□□□ -0.8
SS18-205ENST00000542420 ZNF669Q96BR6 464 aaPredicted RBP10.06□□□□□ -0.8
SS18-205ENST00000542420 RANBP9Q96S59 729 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 SLC13A1Q9BZW2 595 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 TMPRSS4Q9NRS4 437 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 OSER1Q9NX31 292 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 CLIC5Q9NZA1 410 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 COX16Q9P0S2 106 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 HAO1Q9UJM8 370 aa10.06□□□□□ -0.8
SS18-205ENST00000542420 TIMM13Q9Y5L4 95 aaPredicted RBP10.06□□□□□ -0.8
SS18-205ENST00000542420 MYLKQ15746 1914 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.05□□□□□ -0.8
SS18-205ENST00000542420 CAPN14A8MX76 684 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 KCNK1O00180 336 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 MAGEC1O60732 1142 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 PIAS1O75925 651 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 KLHL2O95198 593 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 FGF3P11487 239 aaPredicted RBP10.05□□□□□ -0.8
SS18-205ENST00000542420 HOXD10P28358 340 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 TYK2P29597 1187 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 BRCC3P46736 316 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 MPP3Q13368 585 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 NAA25Q14CX7 972 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 PCLAFQ15004 111 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 SLC14A2Q15849 920 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 DNAL1Q4LDG9 190 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 N4BP2L1Q5TBK1 243 aaPredicted RBP10.05□□□□□ -0.8
SS18-205ENST00000542420 KIAA0408Q6ZU52 694 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 KCNMB4Q86W47 210 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 LMNTD2Q8IXW0 634 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 UMODL1-AS1Q8N2C9 162 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 DNAAF3Q8N9W5 541 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 PPP4R1Q8TF05 950 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 SLC39A13Q96H72 371 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 GPR22Q99680 433 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 RHOJQ9H4E5 214 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 ARNT2Q9HBZ2 717 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 GLOD4Q9HC38 313 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 VPS45Q9NRW7 570 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 TMLHEQ9NVH6 421 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 COPG2Q9UBF2 871 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 DCTN4Q9UJW0 460 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 GABRQQ9UN88 632 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 APOBEC2Q9Y235 224 aaKnown RBP10.05□□□□□ -0.8
SS18-205ENST00000542420 FCHO1O14526 889 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 RTN3O95197 1032 aaPredicted RBP10.05□□□□□ -0.8
SS18-205ENST00000542420 POMCP01189 267 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 PAMP19021 973 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 SERPINB3P29508 390 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 PRDX6P30041 224 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 AFF1P51825 1210 aaKnown RBP10.05□□□□□ -0.8
SS18-205ENST00000542420 RAP1GDS1P52306 607 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 ASPHQ12797 758 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 OVGP1Q12889 678 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 BTG3Q14201 252 aaPredicted RBP10.05□□□□□ -0.8
SS18-205ENST00000542420 E2F5Q15329 346 aa10.05□□□□□ -0.8
SS18-205ENST00000542420 NOMO2Q5JPE7 1267 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms