RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SMG8Q8ND04 991 aaKnown RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 LRRN4Q8WUT4 740 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 SAR1AQ9NR31 198 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 GTF2IRD1Q9UHL9 959 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 ANAPC5Q9UJX4 755 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 ABT1Q9ULW3 272 aaKnown RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 ANKRD34BA5PLL1 514 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 A6NCN8 305 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 B2RBV5 119 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 H3BRJ5 948 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 CIB2O75838 187 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 MICAL2O94851 1124 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 NCAM1P13591 858 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 ATP6V1B1P15313 513 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 SCN1AP35498 2009 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 GABRB2P47870 512 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 FLT3LGP49771 235 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 PRKCZQ05513 592 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 KLF1Q13351 362 aaPredicted RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 CYP4A22Q5TCH4 519 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 C1orf146Q5VVC0 180 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 RAPH1Q70E73 1250 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 LIMS2Q7Z4I7 341 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 KATNAL2Q8IYT4 538 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 NIPA2Q8N8Q9 360 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 ARRDC4Q8NCT1 418 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 ATG4AQ8WYN0 398 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 SAMD11Q96NU1 681 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 MCEEQ96PE7 176 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 CPXM1Q96SM3 734 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 HEPHQ9BQS7 1158 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 NUF2Q9BZD4 464 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 THAP1Q9NVV9 213 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 DDX43Q9NXZ2 648 aaKnown RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 PIN4Q9Y237 131 aaKnown RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 SNX9Q9Y5X1 595 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 CENPFP49454 3210 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 MED7O43513 233 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 ERBB2P04626 1255 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 PFKMP08237 780 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 C6orf222P0C671 652 aaPredicted RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 KCNE1P15382 129 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 AKAP5P24588 427 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 GPD2P43304 727 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 NDST1P52848 882 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 RUNX1T1Q06455 604 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 CACNB2Q08289 660 aaPredicted RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 SPIDRQ14159 915 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 MOGQ16653 247 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 PDK4Q16654 411 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 C9orf57Q5W0N0 161 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 GDF6Q6KF10 455 aaPredicted RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 B3GNT6Q6ZMB0 384 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 TTC7BQ86TV6 843 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 XYLT1Q86Y38 959 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 LRRC52Q8N7C0 313 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 C7orf31Q8N865 590 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 DGCR14Q96DF8 476 aaKnown RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 SERINC2Q96SA4 455 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 FAM118BQ9BPY3 351 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 MTG1Q9BT17 334 aaPredicted RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 THTPAQ9BU02 230 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 C12orf65Q9H3J6 166 aaKnown RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 PCDH12Q9NPG4 1184 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 PPM1HQ9ULR3 514 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 MATN2O00339 956 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 PIRO00625 290 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 C2CD2LO14523 706 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 CASQ2O14958 399 aaPredicted RBP8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 SEPT4O43236 478 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 HNRNPCL1O60812 293 aaKnown RBP8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 TRPA1O75762 1119 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 PGK1P00558 417 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 COL6A2P12110 1019 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 P4HA1P13674 534 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 ACADVLP49748 655 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 ARFIP2P53365 341 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 RELQ04864 619 aaPredicted RBP8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 SOX4Q06945 474 aaPredicted RBP8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 MGAT3Q09327 533 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 SEMA3AQ14563 771 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 MMEL1Q495T6 779 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 PKDCCQ504Y2 493 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 SGO2Q562F6 1265 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 GLRA4Q5JXX5 417 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 LPCAT4Q643R3 524 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 DNAJC24Q6P3W2 148 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 RIPOR1Q6ZS17 1223 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 ARHGAP24Q8N264 748 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 ARFGAP1Q8N6T3 406 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 HIPK4Q8NE63 616 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 NRBF2Q96F24 287 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 MRPL45Q9BRJ2 306 aaKnown RBP8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 LRRC19Q9H756 370 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 FAIMQ9NVQ4 179 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 PRKAG2Q9UGJ0 569 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 IPPQ9Y573 584 aa8.15□□□□□ -1.1
PDLIM5-221ENST00000542407 MAGED1Q9Y5V3 778 aaPredicted RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms